Gene detail

Detailed information of Csp20G001710.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp20G001710.1	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Chr20	3293155	3302437	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp20G001710.1

ATGAAGGAGAAATCCAAAACGGCCGCAAGGACTAGACGGGAAAAGGAGAACAGTGAATTTTATGAACTGGCCAAAATGTTGCCTTTACCGTCGGCCATCACGTCTCAGCTGGACAAAGCGTCCATAATAAGACTGACGACAAGTTACCTGAAGATGAGAATTGTTTTCCCTCAGGGTTTGGGTGAGGCCTGGGGTCATGCGAGTCGAACGAGATCTCTGGATAATATCGGACGAGAGCTGGGATCTCATCTGCTGCAGACGTTGGACGGATTCATCTTTGTTGTGGCTCCAGATGGGAAGATCATGTACATTTCAGAGACCGCGTCGGTCCATTTGGGACTGTCTCAGGTAGAGTTGACTGGGAACAGTATTTATGAATACGTCCACCCCGCCGACCACGACGAGATGACAGCTGTGCTGACGCCACATCAGCCCTATCACTCACATTTCGTCCAAGAATATGAAGCGGAGCGTTCTTTCTTCCTGCGGATGAAATGTGTGCTCGCTAAAAGAAACGCAGGCCTCACCAGTGGTGGATACAAGGTGATCCACTGCAGTGGCTACCTGAAGATCCGCCAGTACAGTCTGGACATGTCGCCCTTTGAAGGCTGCTTCCAGAACGTGGGTTTGGTGGCTGTGGGTCACTCTCTGCCGCCCAGCGCCGTGACTGAGATCAAACTGCACAGCAACATGTTTATGTTCAGAGCCAGCTTGGACATGAAACTCATCTTCCTGGACTCCAGGGTGGCGGAGCTGACAGGTTACGAGCCCCAGGACCTAATAGAGAAAACCCTGTACCATCACGTCCACAGCTGTGACATCTTCCACCTCCGCTGTGCGCACCACCTCTTGCTGGTAAAAGGCCAAGTCACCACTAAGTATTATCGTTTCCTGGCAAAGCATGGCGGCTGGGTCTGGGTCCAGAGTTACGCCACGATCGTCCACAACAGCCGGTCTTCGAGACCTCACTGCATCGTCAGCGTCAACTATGTCCTAACGGACACCGAGTTTAAGGGAATGCAGCTGTCCCTGGACCAAATGAGCCCCACCAAGCCAGCCTTCCCCTACGCCGACAGTCACAGTGAAGACAGGAAGAGCACTAAGTCACGTTTGACCCCGGCGAAGGCCAAAGCCAGAGTGTCACCCTACCCACAGTTTTCAGCTTTCAATCCAGAGCGGTCGGAGTCCGACCAAGACAGCCAATGGGGAGGGAGTCCCCTGACAGATTCTGCATCTCCTCAGCTGCTGGATCCTGGCGAGGCGGCGGATGCATCCTGTGCCTACAGACTCTATCCAGACTCAGGCTCCTTGTGCTACAGCCTTGGTCTATCAGAGGACGATCTTGCCCATGCCCAAGCACATCCTCATACCGCAACCTGTGACCGCGTCCGATGCCAGAGTGGCCGCTACTTCCTTGGAACCCCCCAGTCGGGGAGGGAGGTTTGGTGGGATGCCACACGGTCTGTGCTTTCGCTGCCGAAATCGTCCGTGGAGAACAGCGAGGGCTACGAAATCACATCGTACCATGGAGCCATTCATGGACGGGGTCACTGGGATGAAGACAGTGTAGTGAGTTCACCTGACGGAGGCGGGTCCACCAGCGATTCGGGCGAGCGTTACCATGGCGACCATTTCCGAGCAACCCCGCGAGAGCCGAGCAAGATGGAGACCCTGATCCGAGCCACGCAGCAGATGATCAAAGAGGAAGAGAGCCGTCTGCATCATCACAAGCAGCCGCTGGACGTCTCGGGCCTCGCCAAAGCTCACAGCCCGTGCTTCGCTTCGTCGCTCCAACACCACTCACAGCTCACCATGCCCAGCGTGGTGTGCCGCGGCCCCGGAGCCCCCAGCATTGACCTACCCCCTGAACGCCTCCATCACCGGGATGCAGTCAAAGTGCTCGGCCCGCATGACAATGACGAAAACACAACCAGTCCAGCATCTCTGTCTCGTCTCAGCAGCCCCAGCTCTGATGGGATCCCAAGGTCGGGCCTGTCCCTCACTAAAGACTACATGCAGACTGATCTTTCCCCCCACCCTCCACAGTCCCAGGGGAGCCCTCTGATCTATCCAACCCAGGAGAGGCAGCCACTGGACATGCAAGCAGCCTATGCTTTGACTGGGTACTCCCTGGAGCACCTCTATGACCCGGACAACCTGCGGAGTTACTCAGGCTTGGCATGTGGAGGAGTCCAGTACGACGTGGCGTCCCATGTGAGGATGCAGGCCGAGCAGATGCAGGGACACAAGGCCACCTCAGTTATCATAACCAATGGAAGCTGA

Transcript

Csp20G001710.1

CGAAAGCCACTCGTTGCGCGTCCTTATAATTTGGAGAGGTGTATGCAGCGCACGGCCCGTTCGCCTTTCCAGGTGGAAATCCAGGAGGAGCTGGGACCAAACTTAACTGGGACGACTGGTGAACCCGCTTCACCCGGACAGGACATGGGTGAAATCTGGCGGCAGCAGCGTGGAGGTTCAACCAGCTAAACTATATCAATGACCGCGCCATCAGGAGTACTATTTTTGGATTCAGCTGTTTCTATTACAACTCCAGCTACTTTTACTTGATAAAAACCTGCAATGAAAAGGAGGCCACGAGGAAAGGAATCCGCCAAACTGCCCATTTGAATGACCCCCGTCTCAGAAAAGGAAGGATACAGTGAGAAGGCGCCGAAATGAAGGAGAAATCCAAAACGGCCGCAAGGACTAGACGGGAAAAGGAGAACAGTGAATTTTATGAACTGGCCAAAATGTTGCCTTTACCGTCGGCCATCACGTCTCAGCTGGACAAAGCGTCCATAATAAGACTGACGACAAGTTACCTGAAGATGAGAATTGTTTTCCCTCAGGGTTTGGGTGAGGCCTGGGGTCATGCGAGTCGAACGAGATCTCTGGATAATATCGGACGAGAGCTGGGATCTCATCTGCTGCAGACGTTGGACGGATTCATCTTTGTTGTGGCTCCAGATGGGAAGATCATGTACATTTCAGAGACCGCGTCGGTCCATTTGGGACTGTCTCAGGTAGAGTTGACTGGGAACAGTATTTATGAATACGTCCACCCCGCCGACCACGACGAGATGACAGCTGTGCTGACGCCACATCAGCCCTATCACTCACATTTCGTCCAAGaaTATGAAGCGGAGCGTTCTTTCTTCCTGCGGATGAAATGTGTGCTCGCTAAAAGAAACGCAGGCCTCACCAGTGGTGGATACAAGGTGATCCACTGCAGTGGCTACCTGAAGATCCGCCAGTACAGTCTGGACATGTCGCCCTTTGAAGGCTGCTTCCAGAACGTGGGTTTGGTGGCTGTGGGTCACTCTCTGCCGCCCAGCGCCGTGACTGAGATCAAACTGCACAGCAACATGTTTATGTTCAGAGCCAGCTTGGACATGAAACTCATCTTCCTGGACTCCAGGGTGGCGGAGCTGACAGGTTACGAGCCCCAGGACCTAATAGAGAAAACCCTGTACCATCACGTCCACAGCTGTGACATCTTCCACCTCCGCTGTGCGCACCACCTCTTGCTGGTAAAAGGCCAAGTCACCACTAAGTATTATCGTTTCCTGGCAAAGCATGGCGGCTGGGTCTGGGTCCAGAGTTACGCCACGATCGTCCACAACAGCCGGTCTTCGAGACCTCACTGCATCGTCAGCGTCAACTATGTCCTAACGGACACCGAGTTTAAGGGAATGCAGCTGTCCCTGGACCAAATGAGCCCCACCAAGCCAGCCTTCCCCTACGCCGACAGTCACAGTGAAGACAGGAAGAGCACTAAGTCACGTTTGACCCCGGCGAAGGCCAAAGCCAGAGTGTCACCCTACCCACAGTTTTCAGCTTTCAATCCAGAGCGGTCGGAGTCCGACCAAGACAGCCAATGGGGAGGGAGTCCCCTGACAGATTCTGCATCTCCTCAGCTGCTGGATCCTGGCGAGGCGGCGGATGCATCCTGTGCCTACAGACTCTATCCAGACTCAGGCTCCTTGTGCTACAGCCTTGGTCTATCAGAGGACGATCTTGCCCATGCCCAAGCACATCCTCATACCGCAACCTGTGACCGCGTCCGATGCCAGAGTGGCCGCTACTTCCTTGGAACCCCCCAGTCGGGGAGGGAGGTTTGGTGGGATGCCACACGGTCTGTGCTTTCGCTGCCGAAATCGTCCGTGGAGAACAGCGAGGGCTACGAAATCACATCGTACCATGGAGCCATTCATGGACGGGGTCACTGGGATGAAGACAGTGTAGTGAGTTCACCTGACGGAGGCGGGTCCACCAGCGATTCGGGCGAGCGTTACCATGGCGACCATTTCCGAGCAACCCCGCGAGAGCCGAGCAAGATGGAGACCCTGATCCGAGCCACGCAGCAGATGATCAAAGAGGAAGAgagccgtctgcatcatcacaAGCAGCCGCTGGACGTCTCGGGCCTCGCCAAAGCTCACAGCCCGTGCTTCGCTTCGTCGCTCCAACACCACTCACAGCTCACCATGCCCAGCGTGGTGTGCCGCGGCCCCGGAGCCCCCAGCATTGACCTACCCCCTGAACGCCTCCATCACCGGGATGCAGTCAAAGTGCTCGGCCCGCATGACAATGACGAAAACACAACCAGTCCAGCATCTCTGTCTCGTCTCAGCAGCCCCAGCTCTGATGGGATCCCAAGGTCGGGCCTGTCCCTCACTAAAGACTACATGCAGACTGATCTTTCCCCCCACCCTCCACAGTCCCAGGGGAGCCCTCTGATCTATCCAACCCAGGAGAGGCAGCCACTGGACATGCAAGCAGCCTATGCTTTGACTGGGTACTCCCTGGAGCACCTCTATGACCCGGACAACCTGCGGAGTTACTCAGGCTTGGCATGTGGAGGAGTCCAGTACGACGTGGCGTCCCATGTGAGGATGCAGGCCGAGCAGATGCAGGGACACAAGGCCACCTCAGTTATCATAACCAATGGAAGCTGA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF00989	PAS	PAS fold	Domain	Interproscan
PF06621	SIM_C	Single-minded protein C-terminus	Family	Interproscan
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR001067	Family	Nuclear translocator	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR010578	Domain	Single-minded, C-terminal	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-