Gene detail

Detailed information of Csp19G008060.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp19G008060.1	TRANSCRIPTION FACTOR 7 FAMILY MEMBER	Chr19	20233441	20308432	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp19G008060.1

GTCGGGACTCCTCGGCTTGTCTTGGGCTCAAATGAGCTGTTTGCTGTTGTTGGGAAACATTAGTTCTCTACTAACCAACCAGCCACATCTCAACTTTTTTCTACATGTGGTGGGGGTTTCTGCACTTCGGAGGATCCCCAGGACTGAGGAGATTTAACTGAAAAGAGGTCCTCTgatcccttttctttttttattgttattattattccttTAAAGTTTTTTATACATCGCAGGGTGGGGGAAGAAGACATGCCTCAGCTCAGCAGCGGCGGCGGGGACGATTTGGGAGCGAATGATGAGATGATAGCGTTCAAAGACGAAGGGGAGCAAGAGGAGAAAATTCAAGAAAACGCGTTCACGGAGGGGGACCTGGCCGACCTCAAGTCCTCCCTGGTGAACGAGTCGGAGATAAATCAAAGTCCGAACGCAGCGGCGATCAGACGCGCACAGCAGGGTGAGCAGAGGGGCTTCGCAGAGAAACACCGGGAGCATCTCGACGGTGTGTCGAAGCACCAAGATGGAGGCATGTACAAGACCTCAGCGTATCCGGGGTATCCGTTCCTGATGCTGCCTGACCCTTACATCCCCAACAATTCTCCATCTTCCAACAAAGTGTCGGTGGTGCAGCAGTCTCATGGGATGCACCCGCTGACGTCCCTCCTGCCCTACAGCAACGAGCACTTCAGCCCGAGTCCTCCACACCTGCCCACAGACATGAGCCAGAAGACAgGCGTTCACAGGCACCAGTCCCAGGACCTCTCGGGGTACTACTCCCTCCCTCCAGGCGGCGTCGGCCAAATCACTCCCTCAATGGGCTGGTTCCCTCACTCTCTGATGCTGGGCCCATCAGGCATGCATCCCACAGGGATCCCCCACCCAGCTATAGTGCCCCCTACAGGCAAACAGGAGCACGAACAGTATGACAGGGGCATGTATTTGAAACCGCAGGAGGTCAAACGGGAGAAGGAGCCCAAGAAACCGGTGATCAAGAAACCCCTGAACGCCTTCATGCTCTACATGAAGGAGATGAGGGCGAAGGTCATTGCCGAGTGCACATTAAAGGAGAGCGCCGCCATCAACCAGATTCTTGGACGAAGGTGGCATGCACTGACCCGAGAGGAACAGGCCAAGTACTATGAGTTGGCTCGGAAAGAGAGACAACTCCACATGCAGCTCTACCCGACCTGGTCTGCCAGGGACAACTATGgcaaaaagaagaggagaaaaagggaGAAGCTGCAGGACTCCAATGCAGACCCGGGCTCTCCTAAGAAATGCCGGGCTCGCTTCGGCCTCAACCAACAAACGGACTGGTGCGGTCCTTGCAGGAGGAAAAAGAAGTGCATTCGCTACCTTCAAGGAGGAGGCTGCCCCAGCCCAACTTCTTCAGATATAAGTGCTATAGACTCTCCCCCCTCCCCATCCTCCGCCCGCCACCATCTGTACCAGCACCAGCGCCCTCCCTCCCCGGGTTGCTCCCCGCCGCCCACCTCCCCATCAACTCTCCTTCACTTGTCTCCGCCatcacacacacgctcacacacacgcTTACCCCTGCAACAGTCTGCCGGCAAACGCTGCGACCCCCGACAGCCCCCACCCAAACACGCCCACACACACCTGGAACTGTCCAGCAAGCAGGCGCACAGCACAGCGGCGGCGCTGTCAGCCGCCAAGGCGGCTGGACTTTCTCTCAAAGTGCTAACAGAGACTCAGTGAGGGCTTCAGTCTGCTCACATCCCGGGCCCAGTTCACCTCAGCTTCCTCCAGAGCCATGAGATCATCTTCCTCACATTCATCTTTACCGTGTGGTCCTTTAATACAGTACCGTGTGATGATTAAAGGGGAGCCATCCTTATGTTCCTGGTAACAAGCCAGCAGCCGCCCTTGTTAGACTGACCCAGAGTCAAATATCAGCTGTGTCTCAGTTCTGAGGCTGAATCGTTTTAAATGTGCGTTTGTAGGCAGAATAtgtcatcaacaggtcagagagaGTCTCCCTCAATAATGATCAATAATGATTTTTTAACCAGGCAATTCTTGTCAACCTGAACATTTGGAAATATCACATAACTAAGCCGttagagaaaatgaatgaatgaatgaataaatcacaTTTGGCAGCCATTAGTTAACTGTAACCAGCCTGGACATCAGTTTCATATTTACCATTAACCTTGTCCCAGTTTGATATTTTGTGATACTTATCAAATATTGTTTTAGAAGCTGATGAGGAACATGTGAATACAGCAGAGTCTGTGTCTGCCTCTGAAGCATCCACCTCCTGAGCCATATCTGGGACCCTCCAGCTGTAGTAATGAGGCTCTCTGGCTCCATCTGCTGCAGATTCATCCAATTCATGATTTGCCTTGAGGGCAACTCTAATCCTTTTTGAAATacttattctgttttttaactCCATGACAATCACTAACTAAATGTACTGTAAATGAGCTCTTTGCTATCTGAACAACATCAACACAGACCTAAAACTGAGGAAGAGATCAGTTCTGAGACAATCTGCTTCACCACTGTCATTCAGACTAAACCTGAGGGGAGCACAGACCAGCAACCAACCAGTTTAACCAGTATAACCTCAGGTCTAGAGAAGAACGGATGGATTTTTTAGCTTCCATTAACTGCTCAACTTCAGCTAGAGATATTTTTACAGCTACCTGTGCAGCCCTAAAGGAAAAAACAGAATTATAGTGTCCCAAACTTCAAGTTCCATTATTTCTTTGAAGCACTTTCAGACTCAGTCTCTCGTCTAAACGTTACATTCGTGTTCCGTTTCCTATTTTTGTATGGATATCATGTGACTTTTAAGGTCAGATGTTCTGCTGGTGGGGAACCCAGATGGTTTTTTTAAGTCTCCTGGCTGTTTTCCTTTGACCAAACATTTTGCAGCTCTGTAATCTGAGACCAAATGGGTACTTTATTATATTGCATTGTGTTGTAAAGTTTTATAAATGTTGGAATTCCTTATAATTAaacttttatatgtttttatgtaaaaaaaaaaaaagtgaaatgacaaaaaagttTCTACATTTCTTATAGCGATATTTTATTTGTCCTCTCGTGCATATTCTCAGTCAAGTGTTACTGCAGCAGCGTTCCAATGGTatcttgtgttttcagtctgtgCATGTTCCAacttaatgtaataaaaatgatttattcTGCTTCAAACTCAGCAGCTGTAGACAACTGGAGGCTGAGCTTTTCCTCCAGCAGAGGGCGCTCTTCTATAGAaatgcttgttttattttgagcaTGTTCACAGCAGTAGTGGCAACACTTTGAAGATAtcctgcatatttttttttttactcctcagATGTAttacttgttttgtttgatgtaTTAAAGTGTTTTGCATATGTTGTCTATGTTTATTGTGGGTAAGACAAGGACATTTCAAGAATAATTATTTCAGTGCa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF08347	CTNNB1_binding	N-terminal CTNNB1 binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR013558	Domain	CTNNB1 binding, N-teminal	Interproscan
IPR024940	Family	Transcription factor TCF/LEF	Interproscan
IPR027397	Homologous_superfamily	Catenin binding domain superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10373	TRANSCRIPTION FACTOR 7 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016055	Biological Process	Wnt signaling pathway	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:1990907	Cellular Component	beta-catenin-TCF complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-