Gene detail

Detailed information of Csp18G001180.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp18G001180.1	TRANSCRIPTION ELONGATION FACTOR SPT6	Chr18	4798423	4806523	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp18G001180.1

ATGTGGACAGGGTTCACTGAAACACACTTGTTCCTTAATTGTTCCAGTCCAGCAGTCATATCAGATTTCCTTGAGGAGTCAAAGCAGGAGTTTGGAGAGGAGGAACCCAGACCTAAAGAGATGGAGGGAGACGCGGCTCCCGCTGAGCTGTCTGACAGGCAGCCGAGGAATAACGGACATGTCTTTGTTTATCAAACTGATAATGAAGGAGGAGAGAACAGAGATGACCAAGATGAGCAAGGAAATATACGTGGATTCATTGATTATGGTGATGAGGAGGACATGGATGATGAAGACGAAGAATATGGCGACTTCCTGGATGATGACGATCTTGATCTAATTGAGGAAAACTTGGGTGTTAAAGTGAAAAGAAGGAAAATGTATAAACGTATAAAGACACTTGACGACGAGGAAGATGATGGTGATCTGAAGGACTGTATTGCACAAGACCTCTTTCATGGTGTGGCAGAGAGCGAGTTGGAGGAAGGTGAGGTTGTTGAGGAGCCCCTCCCTCAGGCAGATGATGACGAAGGAGAGGATGAGAGGTCAGATATAGATGATTTTATTGTGGGTGATAATGACCAGCTCCTTCCCAAAAAGAAGGGCAACAAGTTGTCAGGATCTACAGCTGTAGCCTGTCAAGAAGCCAAAGAACTCTTTGGTGGCAGCTCTGCCTTTGCTGACTTAAACGCTGACGCAAAGCAAGGCAGGAAGAGCATCTTGGAGATCTATGAGCCCAGTGAGCTGGAAAGCCATTACATGACCGACCAAGACAAGGAGATCCGTGCTACGGACATGCCTGAGCGCTTCCAGTTACGATCCATCCCTGTTAAACCTTGCGAGGATCATGAGCTGGAGGAGGAAGCAGAATGGATCTTTAGACATGGCTTCTCCTCTCCCACTGTCTCCACACAGGACAGCACAAATTATCTCGACAAAGGGACAACCACAAACTGCAGTCAGAAAGGCCTCAGCATGGTTGCCAAGATTAAAGAGGCGCTCAACTTCATGAGGAATCAACAGTTTGAGGTTCCTTTCATAGCTTTCTACAGGAAAGAATATGTGGAGCCAGAGCTCAACATCAATGACCTGTGGAAGGTGTGGCAATGGGATGAAAAGTGGACTCGATTCCAGACCCGGAAGCAGAACATAACCCGTCTGTTTCAGCAGATGCAGTCACGTCAGCTTGAGCAGATCTCAGCTGACCCTGACGTCACCCGTCCTCTGGACACCGCTGACATGGAGAGGCTGAAAGATGTGCAGACTGTTGAAGAGCTGGGGGATGTGCACAGCCACTTTTTCCTCTACTATGGCCGAGACATCCCCAAGAGACAGAATGCTGCCAAAGCCAACAAGAACAGTCTCCAGAGGATTGATTGCTTGGCTAAAAAGTTTGGATTAACTCCAGAGCAGTTTGGAGAAAACCTGAGAGACGGTTACCAGCATTATGAGACACGGCAGTTCCCTGCTGAGCCTGTGGAGATGGCCAAAGATTATGTTTGCAGTCGGTTATCTACTCCTGAGGCCGTGCTGGAAGCAACCAGGTACATGGTGGCCATCCAAATTGCTCATGAACCTCTGGTCAGACATGTTCTCCGACAGACCTTTCAGGAGAGAGCCAAGATCAACACCAAGCCTACAGTGAAGGGCGAAAAGGAGATAGATGAAGCTCATTTTGCCCGCTCCTTCAAGTATGTAAAGAATAAGCCAGTTAAAGAGCTAGATGGAGATCAGTTCTTAAGGATGTGCTTGGCAGAAGATGAGGGCCTGCTCTCCGTTGATATCAGCATAGACCTTGTCAGGGACAAAAGACATGCTGGGGACCAGACGTACTTTGACGAGATCAAGCAGCTCTACTACAAGGAAGAGTTCAGTCACCAAATACAGGAGTGGAACAGGCAGCGAAGTTTAGCCATAGAGACGTCTCTCACTCAGGTCCTCTACCCTCAGATGGCCAAAGAACTCAAGAATAAATTGATGGCTGAGGCCAAAGAGAGCGTTGTCAGGTCCTGCCGTAGTCGGTTGTTTAACTGGCTCAAGGTGGCTCCTTACAAACCAGATCAGCTAGTTGAGGAAGACGATGATCCGATGGATGAGAATCAAGGCGAAGGCATTCGGGTTTTAGGTGTAGCCTATTCACCCAGCAGAAATACACCTGTCTTCTGTGCTCTGATCAATGGGGAAGGAGAGGTCACTGACGTGTTGCGTTTACCCAACTTCATGAAGAGGAGGAATGCCTTTAGGGAGGATGAGAGGGGTAAGAAGGCCCAAGACGTTGAAAAACTCAAGAAGTTTCTGACCAGCAAGAAGCCTCATGTTGTAGCTGTCGCTGGGGAAAACCGAGATGCCAACATGATCATAGAGGACATCGAGACGACTATCAGTGAGCTTGAGCAAGAGTCCTCTCTGCTTACCATGAGAGTGGAACTTGTTGACAATGAACTGGCCAAGCTGTACATGAACAGCAAGAAGTCTGAGGTGGATTTTGTGGATTACCCTCCCCTGTTGCGACAAGCTGTGTCGATAGGCAGGAAGGTCCAGGATCCCCTAATGGAGTATGCTCAAGTTTGCAGCACTGATGATGACATCCTCTGTCTCAAACTACACCCGCTGCAGCATGTGGCGAAGGAGAATTTGCTCCCTGCTCTTGACTGTGAATTCATCAATCGTGTCTGTGAGGTTGGAGTGGATGTGAACAAGGCCCTTTGCTATCCTCACACTCAGAGTCTTGTTCAGTACGTCTGTGGTCTGGGACCGAGGAAGGGCTCCCACTTGCTCAAGGCATGA

Transcript

Csp18G001180.1

ATGTGGACAGGGTTCACTGAAACACACTTGTTCCTTAATTGTTCCAGTCCAGCAGTCATATCAGATTTCCTTGAGGAGTCAAAGCAGGAGTTTGGAGAGGAGGAACCCAGACctaaagagatggagggagacgcgGCTCCCGCTgagctgtctgacaggcagccGAGGAATAACGGACATGTCTTTGTTTATCAAActgATAATGAAGGAGGAGAGAACAGAGATGACCAAGATGAGCAAGGAAATATACGTGGATTCATTGATTATGGTGATGAGGAGGACATGGATGATGAAGACGAAGAATATGGCGACTTCCTGGATGATGACGATCTTGATCTAATTGAGGAAAACTTGGGTGTTAAAGTGAAAAGAAGGaaaatgtataaaCGTATAAAGACACTTGACGACGAGGAAGATGATGGTGATCTGAAGGACTGTATTGCACAAGACCTCTTTCATGGTGTGGCAGAGAGCGAGTTGGAGGAAGGTGAGGTTGTTGAGGAGCCCCTCCCTCAGGCAGATGATGACgaaggagaggatgagaggtCAGATATAGATGATTttattgtgggtgataatgACCAGCTCCTTCCCAAAAAGAAGGGCAACAAGTTGTCAGGATCTACAGCTGTAGCCTGTCAAGAAGCCAAAGAACTCTTTGGTGGCAGCTCTGCCTTTGCTGACTTAAACGCTGACGCAAAGCAAGGCAGGAAGAGCATCTTGGAGATCTATGAGCCCAGTGAGCTGGAAAGCCATTACATGACCGACCAAGACAAGGAGATCCGTGCTACGGACATGCCTGAGCGcttccagTTACGATCCATCCCTGTTAAACCTTGCGAGGATCATGAGCTGGAGGAGGAAGCAGAATGGATCTTTAGACATGGCTTCTCCTCTCCCACTGTCTCCACACAGGACAGCACAAATTATCTCGACAAAGGGACAACCACAAACTGCAGTCAGAAAGGCCTCAGCATGGTTGCCAAGATTAAAGAGGCGCTCAACTTCATGAGGAATCAACAGTTTGAGgTTCCTTTCATAGCTTTCTACAGGAAAGAATATGTGGAGCCAGAGCTCAACATCAATGACCTGTGGAAGGTGTGGCAATGGGATGAAAAGTGGACTCGATTCCAGACCCGGAAGCAGAACATAACCCGTCTGTTTCAGCAGATGCAGTCACGTCAGCTTGAGCAGATCTCAGCTGACCCTGACGTCACCCGTCCTCTGGACACCGCTGACATGGAGAGGCTGAAAGATGTGCAGACTGTTGAAGAGCTGGGGGATGTGCACAGCCACTTTTTCCTCTACTATGGCCGAGACATCCCCAAGAGACAGAATGCTGCCAAAGCCAACAAGAACAGTCTCCAGAGGATTGATTGCTTGGCTAAAAAGTTTGGATTAACTCCAGAGCAGTTTGGAGAAAACCTGAGAGACGGTTACCAGCATTATGAGACACGGCAGTTCCCTGCTGAGCCTGTGGAGATGGCCAAAGATTATGTTTGCAGTCGGTTATCTACTCCTGAGGCCGTGCTGGAAGCAACCAGGTACATGGTGGCCATCCAAATTGCTCATGAACCTCTGGTCAGACATGTTCTCCGACAGACCTTTCAGGAGAGAGCCAAGATCAACACCAAGCCtacagtgaagggcgaaaagGAGATAGATGAAGCTCATTTTGCCCGCTCCTTCAAGTATGTAAAGAATAAGCCAGTTAAAGAGCTAGATGGAGATCAGTTCTTAAGGATGTGCTTGGCAGAAGATGAGGGCCTGCTCTCCGTTGATATCAGCATAGACCTTGTCAGGGACAAAAGACATGCTGGGGACCAGACGTACTTTGACGAGATCAAGCAGCTCTACTACAAGGAAGAGTTCAGTCACCAAATACAGGAGTGGAACAGGCAGCGAAGTTTAGCCATAGAGACGTCTCTCACTCAGGTCCTCTACCCTCAGATGGCCAAAGAACTCAAGAATAAATTGATGGCTGAGGCCAAAGAGAGCGTTGTCAGGTCCTGCCGTAGTCGGTTGTTTAACTGGCTCAAGGTGGCTCCTTACAAACCAGATCAGCTAGTTGAGGAAGACGATGATCCGATGGATGAGAATCAAGGCGAAGGCATTCGGGTTTTAGGTGTAGCCTATTCACCCAGCAGAAATACACCTGTCTTCTGTGCTCTGATCAATGGGGAAGGAGAGGTCACTGACGTGTTGCGTTTACCCAACTTCATGAAGAGGAGGAATGCCTTTAGGGAGGATGAGAGGGGTAAGAAGGCCCAAGACGTTGAAAAACTCAAGAAGTTTCTGACCAGCAAGAAGCCTCATGTTGTAGCTGTCGCTGGGGAAAACCGAGATGCCAACATGATCATAGAGGACATCGAGACGACTATCAGTGAGCTTGAGCAAGAGTCCTCTCTGCTTACCATGAGAGTGGAACTTGTTGACAATGAACTGGCCAAGCTGTACATGAACAGCAAGAAGTCTGAGGTGGATTTTGTGGATTACCCTCCCCTGTTGCGACAAGCTGTGTCGATAGGCAGGAAGGTCCAGGATCCCCTAATGGAGTATGCTCAAGTTTGCAGCACTGATGATGACATCCTCTGTCTCAAACTACACCCGCTGCAGCATGTGGCGAAGGAGAATTTGCTCCCTGCTCTTGACTGTGAATTCATCAATCGTGTCTGTGAGGTTGGAGTGGATGTGAACAAGGCCCTTTGCTATCCTCACACTCAGAGTCTTGTTCAGTACGTCTGTGGTCTGGGACCGAGGAAGGGCTCCCACTTGCTCAAGGCATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14635	HHH_7	Helix-hairpin-helix motif	Domain	Interproscan
PF14639	YqgF	Holliday-junction resolvase-like of SPT6	Domain	Interproscan
PF14641	HTH_44	Helix-turn-helix DNA-binding domain of SPT6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006641	Domain	YqgF/RNase H-like domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017072	Family	Transcription elongation factor Spt6	Interproscan
IPR023319	Homologous_superfamily	Tex-like protein, HTH domain superfamily	Interproscan
IPR023323	Homologous_superfamily	Tex-like domain superfamily	Interproscan
IPR028088	Domain	Helix-turn-helix DNA-binding domain of Spt6	Interproscan
IPR028231	Domain	Transcription elongation factor Spt6, YqgF domain	Interproscan
IPR032706	Domain	Transcription elongation factor Spt6, helix-hairpin-helix motif	Interproscan
IPR037027	Homologous_superfamily	YqgF/RNase H-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10145	TRANSCRIPTION ELONGATION FACTOR SPT6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023	Cellular Component	transcription elongation factor complex	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0034728	Biological Process	nucleosome organization	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0140673	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-