Gene detail

Detailed information of Csp16G008180.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp16G008180.1	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Chr16	17041272	17046975	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp16G008180.1

ttttgtgtttatttcgcTCCGTGTCCGCGCGGGTCAGGTCGACATGGAAGTATTTGCGAGGCTAAGAGTCAAACACAGCGTACCTGTGAATAACCGCGGTCTCCTCAGACACCGGTGGACTTCATAAACCGAACAGAAGCAGCGGGCAGCAGTAACACCTGCCGCGGTTCCTCCGACACCCTCACTCCGTCTCGGCCGTCCGCGACATGGCTCTCAGCTCGGGCGGCTGGGCTCCTCCAGCCTCGGTCCTTGCTTCGTCCCAACAGACTTCATGCGCTGGGCCTGCGCTGACGGCTTGTTGCAGTACCGTTTTAATGTCAGTCCGGGTGTCCGTTTGCCATTCCGGTATCCGGCCCCTGTGCCTACCCGGAGCGGGCAGCGAAGCTCTGCGCCTCCAGCTTAGCATGGACCCGAGCCGGGCCGGAGAGTTCCGACTGGCGCTGCGAGATACGAGCGGAAACCGCAGTGTGTTCATTGCAGAGTTTGACTTGCGCTCTGTGCAGTATGAGGTCAAATCCCCTCGCTGCCATGAGATGCGTCTTGCTGCTCCGCCCCACGACTGCATCTGCTTCAACTTCCGCTGCGACCGTGAGGCCGAGGAGTGGGCCACAGTGGTGATGTCATCGCTACGAGAGGCACATAGAGTTGCAAATATTAACACGCATGAATCAGTCAGCAGGCACAACCACACAACAGCAGGTATGGAGCAGTGGAGCTCGGCATCGCTGCCGCTCACCGAGGAGCTTTGCTTGGAGCTCACCAGGGCAATTGAGGCCGGTGACACGCGAGCCGCATCACAGCACGCGTCGGCTCTGGCTCGGCAAAGAGCAGCGCTGACGATTCAACCGTCTGAGAGGAACTACACTGATGGAGAGATCAGTTTATCTGTGGTAGTGGAGGATGTTTCGTCATCCTGCTGTGTCACAGTTAAAGTCTATCCTTACATGACTGTGGCTGCACTCAAGCAACAGGTGTTTTTTGAGTACGGTTTCCATCCTCGTGTGCAGCGCTGGGTGATCGGTCAGTGTTTGTGCACTGAGCCGAGGTCACTGGCCTCCTACGGGGTGCAGAAAGATGGTGATACAGCATACCTGTACCTGATCTCTGCCCGACAAGCCCGCATCACTCGCCAGCTGTTCCAGCAGGACCTGGATAGCGTCCTCCTCGCCCCACCTTTCCCACCAGGCAACGGACCTACTTCTCAAGACTGGAGGGGTTACAGCACCCTGCCCTCAAGACTACTCCACAACAACCAGGGTAGCGCAGGTGGCGACAGACCGGGTGACACGAAAGATGTCCTGGACATTGAGCATCTGCAGCTGAATGATCATACCAACAAAACCAGTAAAACACAGCAGACAGAGTGGGCTTGCCCCTCATGCACTTTCATCAACAAGCCGTCCCGGCCGGGCTGCGAAATCTGCGCCACGGCCAGACCTGACACACACATCCAGCAGgagagagggaggagggaggttcGAGGAGAGTCCGGtttaagcagcagcagcagctgactgCCCATCATCCCTGTCTGGTCGCCATGCCGcactccctcacacacacatacacacacacagagattgAGGATGCTAAATCTGCCACATACATGTTGACAACATTCTCAAAGACTTGTCGAGTGCACTGAGAGTCGTCTGACAGCTGGTCGGCTGCTGAAGACGTTTGAAGCACTGTAGCATGACGCAGAGCGGCAGTGGCCGAGACTCAGGCCACGAACTGCAGACAGAGAGCCACAGCTTTGACCATCGATGTGGACGTGACCATGACATACATCCGAGTTTAGCCTGAcctctttatttatttcccaGGGTGTGTGTGGCGTAAATAACACAGGTGGcctaatatttattttctatgagAGAGATGTGATGTAAGTTAGCTGTAAGCTGTGGATCTGGAGGTGAGAGGACTTGAATTTCTGCCAACTGAAGTGAGAGGAGTGGTGATTGGGTTTGTTAGTGTCAGCCCATGGGGTCCTAAATGATGATGGAAACCATGTTTAAGAAAACACGGGGCATTTACAGGGTTGCtcagtgcttttattttttacaacaTTGTATTGAGTGTATTATTTTTATCAAGATTCATAATGTAATTACTGTACATTTTAGCAGTTGATCTAATTTCCCTCTGAGCTGTGACAAATGGAATGATTTGTTTTCAGTATTTAAGGCTGTTAACACTTGCATCAGCTGATTAAACAAAATTGAAACTCAACAAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF16764	Sharpin_PH	Sharpin PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR031912	Domain	Sharpin, PH domain	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR051628	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-