Gene detail

Detailed information of Csp16G007520.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp16G007520.1	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	Chr16	15516851	15522417	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp16G007520.1

GTTTCCCAGTACTTCCAGGAGAAGCAGAGGCTCACTTTTAGGAACTTTGCGTGCGACCTATGGCACATAACTAGCAGGGTAGGCTACTCCCTGACGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTGAAGCGAGAAGTATCCAGCAGCCCAGGGTCACCGGCTGAGCAGACATACCTGCCCGGTGACAGCAGGAGGGACGGTCCCACCTCGGATGAGCTGAGGACTCCTCCGAGCGATCTTGACGCACTGGGTCACCGCCGCTCCGACGGCAGATCACTACACTCCTACGTTCATTTCGGACACCATAACAACACCCTGACCACTGCCGAGGACATCCCGCTGTTTACGGATTTAGACCAGGGCAGCAAACTCGTCCTCTCCAGCGGAGTGCACAAGACGAGCTTGCTGGTGGACCCGACCGACATGTACCAAACACTGGCCATCGCCGCCGCCCAGAGCCAGACTGGATATGATTCCTCCTCTGGTGGTTATATGCACTCCAACCCCAACTCCCCCGTGTATGTCCCCAGCTCTCGGGTGGGCCCCATGATACCCAGCCTCTCTTATCTGCCGTCCAGCGGCTCTGGGCAGCCAAGCCACGCTGTCTCCAGCCACTCGGTCTGGTCACAGTCCACCCCGGAGAGCCCTTCATACAGCACCGGGAGCCCACACACCTCCAGTCGGTTCCACTACCCTCCAAGCCCGCCCATGAATAACGGGACGCCCAGGGACACCGGCTACAGTAACGCGCTGAATGTGAGCAGCAGAGACCAGTACGGCCTCTCTCGCCCTCTCAGTGGGACCTATGCGAGTCCATACTCTCCTTATGTTGCACCGCAGCTGTCCCAGCTGCCCTCGCCTTGGACCGGGGGACCTTTTGATAACACGATGCTGCACACCTTGCAGAGCAGGGGCGCGCCCTTGATTCGAGGACCAAACggagTTTCAGATATTCTTGACGACATGGGGGAGAGCAGAGAGTGCGTCAACTGCGGCTCCATCTCCACGCCGCTCTGGAGGCGCGACGGCACGGGCCACTTTCTCTGTAACGCCTGCGGCCTTTACAGCAAAATGAATGGCCTGAGCCGGCCATTAATTAAACCACAGAAACGGACGTCAACGTCCAGAAGAATCGGCCTGTCCTGCGCTAACTGTCAGACCAGCACGACCACTTTGTGGCGCAGAAACGCGGAGGGAGAGCCAGTGTGTAACGCATGCGGACTCTACACAAAATTACACGGGGTACCTCGGCCGCTCGCCATGAAGAAAGAGGGAATCCAGACGAGGAAAAGGAAACCGAAAACTTTGAATAAAACTAAGGGATCGTCTGGAAATAACAACTCGGTCTCTATGACTCCCACATCTACATCTTCATCAAATTCTGAAGACTGCTCAAAAACCAGCTCTCCTTCCGGACAGGTGTCAGGGGTCAGCTCGTCTGTGCTGTCCAGCTCAGGGGAGGGAGCAGGCTCCGGCTCAGCGGTGAAGTACCCGGGACAGGACGGCCTGTACACCAGCGTGGGTCTGTCCCAGCCATCAGATGTAGCTTCAGTGAGGGGTGAACCCTGGTGCCCCATGGCCTTAGCTTGAACATTAAAATCATTGGGAGGACAGCAATCCCTGGCCCCTCTGTCTGGATGCTATGTAGTTTGGAAGTATTCGGGGGCGACATTTGTTTCCTTCCTCGCAGCTGATGCAAGAAGATTCAGACAGGGTGGAATGACGGGTGAGACGACCCTCAGCCACGCTGCAAGCTTGATCCAAACGAGGAATAGCTGGGATTGGTTTCCAGATTGGTGTGGGGATCTTGTTGCCTTAAGAAAACAAAGGGAATCTCCAGGCCAAATGATCAATCAGGTGACCTGCTTTTGATGGTTTCTGGACCTGCCATGCACTTGATGTCTCTCCCATCCCATGGCACAGAACCAGACCTTGTTTCTTACAGTAAAGCCATCGTGTACATAACGGATTTCCTCTGTGAAGAGAAaaagctgttgattggatacCACTGCTTCGTAAAGCGCTGTATTCTCTAAGGACatttagatcttttttttttctttccacaaCTGGAATCATTGCCACAAGTGCCAAGACAGGTTTATTGaatcaaaagaaaaatatttataaatctTCCATTGTTGAAAACATGGCTATGATTGTTAATAAAGATATGAATATAGAGTAGAAGTTAAACCATCCTGATGTCTTCTTTtctaacttttttctttttaagtggTTGTTTTTGTAGTACAGTAGTGTTGAATCTGCACATGTTTTCCACTGAGAGCTCTTACTGTATTTGACTGAAACTAGTTTGGTTTAAACAGGGTATAAAAGAATTTGTCATCtaatggttttatttaattttttcattgAAAAGTGCAAGTAATCAACTCCTTCAGactgatttttgatatattttgtcATCTTTTGGGTACTATTCTCACAGCAGAGTCACAAAAACTCttttacatgtaaaacatttggATGGCTTGTGTGAACAAATAACACCAGAATTGCTGTGGACCCATGCCTTAATGTTACAAGACATAAATTGCAGAAGACAGGCTGCACTATCTGTCTCACTATAAACTGTGTATCTTTCAAGCATGTACTGTTGCATCATTTATACGTAAATTAGACCAGAGCAGAGAGTGAGGTCATCTCAGAACAAATTCATGTTAATTGGATGATTTTGGCTAATCCCTGCAGGGATTAACGGCCAATAGTTTAACACAATGAGTCAAAGTGGACAGTTGATACAGGAAATAAAAGAAGCAAACAATTTGTATAACAATGCAATGATTTCATTAAAATGCACACACTTTGTGGTAAAAACAGCTGCatgcaaaatttaaatttgaaaagttagatttgatttttcatacattttatcGCCATGTCCTCCAGCCCTGGTGTGGGTGGAGTCTTAAAAAGTTATTCCtggctgaaaaaaagaaa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-GATA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00320	GATA	GATA zinc finger	Domain	Interproscan
PF05349	GATA-N	GATA-type transcription activator, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000679	Domain	Zinc finger, GATA-type	Interproscan
IPR008013	Domain	GATA-type transcription activator, N-terminal	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR039355	Family	Transcription factor GATA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10071	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030855	Biological Process	epithelial cell differentiation	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045165	Biological Process	cell fate commitment	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-