Gene detail

Detailed information of Csp16G006860.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp16G006860.1	TRANSCRIPTION FACTOR E2F	Chr16	14217697	14224566	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp16G006860.1

TCTGCAGACGGGGTGGGCACGAACGGGACAAGGGTTGCTGTGGCAACTATCCTAACGTAACGTCCGTCGATTTAACATTAAAACCGCTTTAGATACTGTCGTCGCCCCGTTGAGAGAGAAGATTGAGTTGGAAATGACGGAGACGGTACGCTCGACACCGAGTCGCCACGAGAAAAGTTTGGGGCTCCTCACGATGAAGTTTGTCAGTCTGCTTCAAGAAGCTAAGGATGGCGTCCTTGATTTAAAAGTGGCCGCAGATATCTTGGCAGTGAAGCAGAAGAGAAGGATATACGACATCACCAATGTATTAGAAGGAGTGGACTTGattgagaagaaaaacaagaacatCATCCAGTGGAGGGGAGAGAACTCCGGCAGCCAAAGTCAGGAGGTTGTGGAGCAGGTGAAGGTTTTGAAAGCCCAAATCTCTGAGCTGGAGACTCAAGAGAAAGAGCTGGACAACCAGAAAGCATGGCTAGAGGAGAACATTGAACTCCTTAAACATGATCCCATCACCAGCACTTATAAATTTGTGACACATGAGGACATCTGCAATGCTTTCAGCGGAGAAACTCTCCTTGCTGTAGAGGCTCCGGCTGGGACTCAGCTGGAGGTACCGCTGCCTGAAGTGGGCAAGAATGGTCAGAGGAGGTACCAGGTGAACTTGCGCAGCCACTCTGCTCCTATCCAAGTCATGCTCATCAACAGGGATTCAGACTCCTCAGTACCTGTGGTCTTCTCTGTGCCGCCTGCTGAAGGCATCTGTCCAATGCCATCTCCACCCACCACCCCCGCCAACCTGCAAAGGTTCCCTCTCTGGACGTCCCAGTACTCCACCTCCAACACCTCCTCCTACTACAGCCAGGATTCTCTCTGCTCAGGCCACCAGATGGTGCTGCCAGAACACGATGACGTTTTGACACCATCGTCCACCCCTCCTGATGTACAAATGGAGTGTCACAGTCAGCCAGCAGCAatgttgcagcagcagcaggtggacCTGGCAGACCCAGAGTTCCAGTCTGTACTGGATGTGAGCAGCCTGTGGAAGCTCAGTGCTGCTGGAGACCACATGAAGGATGACAGAGATGGAGCTGTTGACCTCATTGATGAGCTGATGTCTTCTGATGGTATAGATTACAGCTTTAACCTTGACAACAATGAGGGAGTGTGTGACCTATTTGACGTGCAGATCCTCAACTACTGATGGCTAACAGTGCCTCTGCTGTGCATGTAAacaatctggggaagcccttttTTTTGTCACTCTGAAGACTCTTCAAAGTTgccttttccattttttttgtttccaattGTACAAACGATACTTAAATGCACCATTGTCATCTTAAAAACCATTTACACTCATTAGACTTCACAGCTGTCTGACAGATGACTTCACTTCCTGATAGTAGCTTTTTGTCCTCAGccaacaaaaaaataagtgcCTGAATTTTAATTTACAATGACATTTATTCAGCCACCACTCATGAGTCCATTGAGTTTAAATGGTTTGCTCACTAAATATCTACAACATTCCAGAGAATGAGTCGTGGAAGTAAGCCAGGACAAATTCCTCAGCCTCCTTCTGCACTTTTGCATATGAACAGATTTtggcagtgttttgtttttgcttacTCACAGTTGGAACAACtcagtattgtattttttcctcatatttgATGATCCAGTTCCAGATGATCCGGTTCAGGGAATATAAGTAACTTTATTTACATGGAAAGGGTATTGAGTAAAAGCCTCACAATTTCCATAGTTATATTTTATAAAGTGGCATTTTGTATTTAATGAGTGAatgttttggttgtgttttGTAACCTTGTTCTCGTATGAAAATGCCAGAAAGTTGTCTTTTCTAAATTATTGTGACACTGCCGTTTCAGGCCTCTTgagtttttgtttaaaataattcttataattatatttcaatattttttacttaatttaagaaaaaaaggATTCTTTGTTCTTGTGTGTTGAAACTGAAGCTGTTTGACTGCCTTAATCATAATTTAAACCGTGAATTGGCCATATTTCTTATCTGAAATATCAGATGTTAAGAGCCTTAAATTgcatttttgtatatttatatacaaaTGTATGTTCTTTGATTATAAGAATATTTTCTCTACATTTAGTTgtttatttgcacattttttaaataaattgatttatt

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	E2F

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02319	E2F_TDP	E2F/DP family winged-helix DNA-binding domain	Domain	Interproscan
PF16421	E2F_CC-MB	E2F transcription factor CC-MB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003316	Domain	E2F/DP family, winged-helix DNA-binding domain	Interproscan
IPR015633	Family	E2F Family	Interproscan
IPR032198	Domain	E2F transcription factor, CC-MB domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR037241	Homologous_superfamily	E2F-DP heterodimerization region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12081	TRANSCRIPTION FACTOR E2F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0090575	Cellular Component	RNA polymerase II transcription regulator complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-