Gene detail

Detailed information of Csp16G000960.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp16G000960.1	RING FINGER PROTEIN 31-RELATED	Chr16	1678063	1685233	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp16G000960.1

ATGCCGAGAGTTGCAGCGGAGGAGGAACTTCAGACTCTGACAGAGTGTCAGTACATTCATCCAGCAGAGACTCTGTTTGATCTTCAGAGGGTCCGTTCAGTCTTCTCTGATCTTCGTCTGTATGTGGATTTTTACTGTTTTCCAAACAAAGAAAAGAAGAGGCTGGTGTACCTGGCGGGGACTCTACCTGTTCACTATAAAGGAAGTGGGTATAATATCCCAGTGTGCATCTGGCTTCATGAAACCCACCCGGTTTCCAGACCGCGTTGTTACATCTGTCCCTCTGTCTCCATGGTGATCAACCTGTCCTGTCCCTGTGTGGACGCCTCTGGCAATATCAGTCTGGACGGAATGAAGAACTGGACTCATGGTGTGTCCAACCTTTCACTGCTTGTGTCAGAGATGAGGCGGGCCTTCCAGAAGTGCACGCCCCTTTACTCCAAGGGTGCTGTACAAGCCCCGCCTCCTGAAGGTGTACAGGTGTCACAGTCCGGTGGAAGCCTGCAGCACCTCACCTCTTCCTCCTCCACCTCCCACTTGTCTGGACAGAGAGCCAGCCAATCGGAGCAGAGCAAAGAGATGAGGTCATACACAGAGGAGCTACTGGGGATTGACTTCAGTGCTCCTTCATCATCACCCTCCTCCATCAACCCCTTCCTGAGGTCCTCCTCCTCGTCAGGTGTCCTTCCTCCAGACCCGCTCAGCAGGATGATGGGAGCTCTGAGGCTGGACAGAGACCAGAAGAGAGACTCACCTGGACAAACAGTCCAATCAGAAGCAGCCAGAGGTTCTGTGGTGCTGGTTCCAGGTTCTGGACCAGCAGGTGGACTTCATCAAGACCCTTGTACTGGGAGACGGCAGTCACAACCAGCAGCCAGCGTGGACCACATCAAGATGTTGGCTCGTCTTCCTCCGGACAGGGCCGCTATCTTTCTATCTCTGATGTCCATGGAGGGGCAGAGTTTTATTCCCAGTGATGTCCTGGAAGCGGTCCAGCTGAACAAAGATTTCCCTTCAGCCCTCAAGTATCTGACTCACAACTGCCCCATCTGTCAGGAGCAGGTGTCCTTCAGCAAGATCATCACCATGACTCACTGCTCCTGTTTCATGTGTCAGACATGTTTCAAGACTTTTTTCTCGTCAGCCATCAAAGAGAAGAGCATCAATCAGCTGGTCTGTCCTCAGTGTGGCAGACCTGAGATCAGAGGTCAGGGGGGGTTGGAGGAGTCCATGGAATACTTCAACCTGCTGGACACTCAGATCCGTCACTTCCTGCCTCCTCAAATCCACGAACTGTTCCAGAGGAAACTCAGAGATCGAGCCCTGCTGGAGATGCCAAACTTCCGCTGGTGTGCTCATTGTTCATTCGGGATGCTACATGAAGCGGACCGATTGAGGATGGACTGTCCGAGCTGTAAGAAGAGTACCTGCTCTCAGTGCAGATCACCTTGGTCCCCTCAACATCAGGGACTGTCCTGTGACCAGTTCAGAGGGTGGCAGCAGCAGAACCAGCCGGACCACTATAGGACTACCCTGCTGAGCTACAACAGCATCGAGTGTCCAAACTGTCAGTTTGTCTTCAGTCTGTCAAGAGGAGGCTGTCTTCACTTCACCTGCAGTCTATGTCAGCATCAGTTCTGTGGAGGCTGCAGTCAGCCCTTCAGACCTGGATCTGCCTGCGGTTTCTCTGCTGACTGTGGGACCAGAGGGCTTCACGCCCACCACCCCAGAGACTGCCTTTACCACCTGAGAGACTGGAGCCTGCACCGTCTACACCTGCTGCTTCAGCATTACAAAGCATCTCCTACCTGGTTGGAACCCGCCAATGGCAGCTCAGGTGACAACAGTCAGACAGGGGAGTGTTTGGTTCTGGAGCTGAAAGATGATGGCAGCAGATGTGAGCAGCCCTGTGGAAGACCTGCTCCACCTGAATACAGAGGTTACTGCCAGGTTCACTATAAGGAGCATTTGGTGGAGCTGATTAACCGTTGCCATGGCGACCCTGTGGTCCTCTTCAGCTTGGCTGAGATAAGGGCGGAGCTACAGCGATGGAACCTCGCTGTGCCAATCAGGAAACCAGACGAACCAGAGCTGCTGTACGCACACCGCCTCCGCCTGATTCTGACCAATAGCGTTCCTCTGATGAAGCAGCGACACTCTCCCCTCAAACTCCACGACACCTGA

Transcript

Csp16G000960.1

TATTTGTGAGTTCCTCTAGCAGCTTGTTAGCCTGCTAGCAGGTGGACGTAACCATAAATGAGTTGTTTTCGGCTAAGATGCCGAGAGTTGCAGCGGAGGAGGAACTTCAGACTCTGACAGAGtGTCAGTACATTCATCCAGCAGAGACTCTGTTTGATCTTCAGAGGGTCCGTTCAGTCTTCTCTGATCTTCGTCTGTATGTGGATTTTTACTGTTTtccaaacaaagaaaagaagaggcTGGTGTACCTGGCGGGGACTCTACCTGTTCACTATAAAGGAAGTGGGTATAATATCCCAGTGTGCATCTGGCTTCATGAAACCCACCCGGTTTCCAGACCGCGTTGTTACATCTGTCCCTCTGTCTCCATGGTGATCAACCTGTCCTGTCCCTGTGTGGACGCCTCTGGCAATATCAGTCTGGACGGAATGAAGAACTGGACTCATGGTGTGTCCAACCTTTCACTGCTTGTGTCAGAGATGAGGCGGGCCTTCCAGAAGTGCACGCCCCTTTACTCCAAGGGTGCTGTACAAGCCCCGCCTCCTGAAGGTGTACAGGTGTCACAGTCCGGTGGAAGcctgcagcacctcacctcttcctcctccacctcccactTGTCTGGACAGAGAGCCAGCCAATCGGAGCAGAGCAAAGAGATGAGGTCATACACAGAGGAGCTACTGGGGATTGACTTCAGTGCTCCTTCATCATCACCCTCCTCCATCAACCCCTTCCTGAGGTCCTCCTCCTCGTCAGgtgtcCTTCCTCCAGACCCGCTCAGCAGGATGATGGGAGCTCTGAGGCTGGACAGAGACCAGAAGAGAGACTCACCTGGACAAACAGTCCAATCAGAAGCAGCCAGAGGTTCTGTGGTGCTGGTTCCAGGTTCTGGACCAGCAGGTGGACTTCATCAAGACCCTTGTACTGGGAGACGGCAGTCACAACCAGCAGCCAGCGTGGACCACATCAAGATGTTGGCTCGTCTTCCTCCGGACAGGGCCGCTATCTTTCTATCTCTGATGTCCATGGAGGGGCAGAGTTTTATTCCCAGTGATGTCCTGGAAGCGGTCCAGCTGAACAAAGATTTCCCTTCAGCCCTCAAGTATCTGACTCACAACTGCCCCATCTGTCAGGAGCAGGTGTCCTTCAGcaagATCATCACCATGACTCACTGCTCCTGTTTCATGTGTCAGACATGTTTCAAGACTTTTTTCTCGTCAGCCATCAAAGAGAAGAGCATCAATCAGCTGGTCTGTCCTCAGTGTGGCAGACCTGAGATCAGAGGTCAGGGGGGGTTGGAGGAGTCCATGGAATACTTCAACCTGCTGGACACTCAGaTCCGTCACTTCCTGCCTCCTCAAATCCACGAACTGTTCCAGAGGAAACTCAGAGATCGAGCCCTGCTGGAGATGCCAAACTTCCGCTGGTGTGCTCATTGTTCATTCGGGATGCTACATGAAGCGGACCGATTGAGGATGGACTGTCCGAGCTGTAAGAAGAGTACCTGCTCTCAGTGCAGATCACCTTGGTCCCCTCAACATCAGGGACTGTCCTGTGACCAGTTCAGAGGGTGGCAGCAGCAGAACCAGCCGGACCACTATAGGACTACCCTGCTGAGCTACAACAGCATCGAGTGTCCAAACTGTCAGTTTGTCTTCAGTCTGTCAAGAGGAGGCTGTCTTCACTTCACCTGCAGTCTATGTCAGCATCAGTTCTGTGGAGGCTGCAGTCAGCCCTTCAGACCTGGATCTGCCTGCGGTTTCTCTGCTGACTGTGGGACCAGAGGGCTTCACGCCCACCACCCCAGAGACTGCCTTTACCACCTGAGAGACTGGAGCCTGCACCGTCTACACCTGCTGCTTCAGCATTACAAAGCATCTCCTACCTGGTTGGAACCCGCCAATGGCAGCTCAGGTGACAACAGTCAGACAGGGGAGTGTTTGGTTCTGGAGCTGAAAGATGATGGCAGCAGATGTGAGCAGCCCTGTGGAAGACCTGCTCCACCTGAATACAGAGGTTACTGCCAGGTTCACTATAAGGAGCATTTGGTGGAGCTGATTAACCGTTGCCATGGCGACCCTGTGGTCCTCTTCAGCTTGGCTGAGATAAGGGCGGAGCTACAGCGATGGAACCTCGCTGTGCCAATCAGGAAACCAGACGAACCAGAGCTGCTGTACGCACACCGCCTCCGCCTGATTCTGACCAATAGCGTTCCTCTGATGAAGCAGCGACACTCTCCCCTCAAACTCCACGACACCTGACCTCTGCTGTGGCTCCTGAAGCTTTGCCTCCTCACCTGCTGCTGAGCGACTGACTCCGCCTACTCCTGACATGGGAGCCAATGGGTTCTACGTAACCACTTTTATTTCAATTGGATGTTTtggacccaacatcagtgcTGAAGGGGCGTGGCTAGTGATACCTGCAAACTGATGAAAACTAACAAGAAACAAGAAAAGTCCTCACCTGTCTTAatctcagtgatgtcatcatcgtTATGCTATTTAAACGGAgttcattgcattctgtttggCTCAGTAATTACCATGGAAACAGCCAAACAAATTTAGTATCAGGAGGAAGAAAATGGActgagcagccaatcagagttgGACTGATGTTAGCCTTAACAAGCTAATATTGCTAGCAAGCCTTTTCATTATAATGacctgttagcatgtgttagcATGTGTGTATTCTTTCTGCACTTTAACtatttgaataaacatttaaataca

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|UBC-like\|UEV
Ubiquitin Family	E2\|UEV\|UEV
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF05743	UEV	UEV domain	Domain	Interproscan
PF18091	E3_UbLigase_RBR	E3 Ubiquitin Ligase RBR C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR008883	Domain	Ubiquitin E2 variant, N-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR026254	Family	E3 ubiquitin-protein ligase RNF31-like	Interproscan
IPR041031	Domain	RNF31, C-terminal	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR047540	Domain	E3 ubiquitin-protein ligase RNF31-like, BRcat domain	Interproscan
IPR047542	Domain	E3 ubiquitin-protein ligase RNF31-like, Rcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16004	RING FINGER PROTEIN 31-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan
GO:0036435	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071797	Cellular Component	LUBAC complex	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan
GO:1990450	Molecular Function	linear polyubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-