Gene detail

Detailed information of Csp15G006570.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp15G006570.1	BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR	Chr15	18000339	18008752	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp15G006570.1

acacacacacacacacacacggtcatgcagagagagagctgaggggagggagagagagaggtagagcgCCACACACAACGAGGGAACCCCATCAGCTGGAAGTCGAGTAACATTACAACTCTCTGCAGCCTGAAACTACTACATTACACACACGAGGGATTCAGATCTTCTTGCGTCGTATCACAGGATATCTGCTCCATAACgtcatcatttttcttttattctacGGAGACTGCTGttttttagggggggggggagcaaaCTGGCGAGAGGCGAGCATGGAGTATTTCATGGTACCAGCTCAGAAGGTGCCCTCCTTGCAACATTTCAGGAAAACTGAGAAGGAAGTGATTGGAGGTCTTTGTAGTCTGGCCAACATTCCTCTGACCCCAGAAACAGCCCGCGACCAAGAAAGGCGAATTCGCAGAGAGATTGCCAACAGCAATGAGCGTCGGCGTATGCAGAGCATCAACGCCGGATTCCAGTCACTTAAAACACTCATCCCACACAGCGATGGAGAGAAGCTTAGCAAGGCCGCCATCCTGCAACAAACAGCAGAGTACATCTTTACTTTGGAGCAGGAGAAGACGCGGCTATTGCAGCAAAACAGTCAACTCAAACGAATCATACAAGAGTTAAGTGGTTCCTCCCCTAAGAGGAGGCGTGCAGAGGAGAAAGATGAAGGGATTGGCTCACCAGATAtcctggaggaagaaaagactGAGGATTTGAGGAGGGAGATGATTGAGTTAAGGCAGCAGCTGGAGAAAGAGCGCTCTATCAGGATGATGCTGGAAGACCAGATGCGCACTCTGGATGCTCAGTTATACCCAGAGAAACTGAAGGCGATTGCCCTACAGGTCCAAGATCAGCAAGCCCAAACACAGAGCCTTGTTCATCTGCAGCAACACAAGCAGCTGGAGAGGGACCTCACACCAACCCACAGCCCACAGGTTTTGGCCCCAGCTACCCCTCCTGCACCTACACACCATGCCACGGTCATCGTCCCAGCACCTGTCCAGCCTTCCCTGCCCCATCATGTCACCGTGGTAACCATGGGCCCGGCATCAGTTATTAATACAGTGTCCACATCTCGACAGAACCTGGACACCATCGTTCAAgCAATCCAGCACATCGAGGGCACCCAGGGGAAGGGTTGCGTTGGCGAGGAAGAGCAGCGGAGGGCGGTCATTGTCACCTCAGGTCGTGTCCTCTCCGACGCAGCAGGCTCAGACACAGCCTCAAATAGCGACGGGCCTGACGACTGTTCACTGCCCTGAGTTCACCCCCAACACCTCGCATGCCCTACACAGcgtacacacacttacacacacataagtCCCAGGCAGACCAGGGCTACAGAAGGTGACAAACCCACAGCACTCTTGTTCAGTGAACATTAAATATGGCTGGTAGGCAGATTGAAGCActcgtttttttctttttcttttcagtacACACTCTTACATGTTGTACCGTCATAGGCAGCCCAAATAGGTTTACACTTACACACACTTGGCAGTCTCTTCTGCGTCTCCTAACTCTAGCCCCATGCTCTCTCACTCGCTCACAAACACCCATTAATCCGTAGAAAAGGTTATTAGAGTCACTGATTGGTGTATAATTGCTTGGTCATTCTGGATTCTAGAATTTCAGAATGATTACTAggacttattattattttccatgacTGAGCCACAAGGCAGGAGACGAAGTCAAGAAAGGGCCCAGCAGTGAGGTGTCATCACCACCCAACGCAACAGTAGAACATCCTTTAAACGTCCTCCTCTGAGCTGTTTGAAGAGACACTGTGAGCCATCGAGACTGTCTCTACGTTTTACCATATAGGCATCGGGCATGAAAGAATATGTTGTTTTACTCTGGTGACGTCGTTCCCTCAGCCAGAAAGTGATCGAACTGAAAGAAAAGAGCTTTTCCTGCAGTTGACTGACGCTCACAGGAAATGAAGCGAAGCTCTGGATAAGAGAGCGGGCTTTACCAGCTCATAACTCTCTtctctttatttgtttgttggcatTTTTACTGGGCTGGGTTCCCAGTGATCCCACATATGTATTTGGCATGTTCTTtgcctgacaaaaaaaaaaaaggaaaaaaggaaatcaGTGCTTTGACATTTCTTGACACCCTCCCCTCTTGAATATAAAAGCACCTGGCTTTTAAGCTAACCTGTGGGCACTCTAGAGTGACTCCCaccattatgtgtgtgtgtgtgtgtcgcctTTTAGCGTTTTGAATCAGCAGGGCTCAGTGGTGTCCCGGACTCTGGCAGTCTGCAGAAGGACCACTTTTGCCTTGAAATTGAGGCACACAGCACTCACACATATGAATATGACTGACATACAATCACTTGTTTGCTCAAGCTTAAGGGCTGGTTTTATTCAGCCCATAACTGTGTAGTTTCTCGTCCTACAGTAGTCTGTCAAAGCAGATCATACATAAAATACAAGGAACATGTCAAGTGAAATTGATTGAATGTGCCATGGAGGTGACCGGGTTCCACACATGCTCTATGCATTTCCATACATGCATCGTTGGTCGTTTCGTGCTCTTTTTGTATGGCATACCATTCCATTTACATGTTTCTGATCATACTTTAATTGTGCTTTCTTGCCTGCAACTGTTGGTTGACGGACAAACATTAAGACATGTAGCTGAGAGAGGCAGAAGCTTGCCTTACTAATAGCCTATGGGTGCAGGGAGGCACTGTGAAGCCAGCCTTAACACAGCCCTAGGGTCTGGGAGATGTACCTGAACACTTGATCCGGCCGTTTGGTGGAATTCTCTCCAAACAGGCTTGTAAACACTTGGGGAGTGGCAGATGATATATTCCCAGTTATTTTGTCTTTCAGTtatgtttgttgtatttttgcTTCAAAAATCAGGACTTTGCTGGTACACTAGTTACATTCAAGCACTCCTCACATTTCTCCCCCCCTACCCCCCACCCCAAGATTTACAGTTAGATTTGCAGCCATTTTTTGCCCCTTTGTGTGCACTATTAAAATTCAGATGTGCAGGAAAATAAATCCACAATGAATTGTTGACATTCCATTATATTTTCCTCGTTATTTTCATATCAGGTTGCTTTTCAAGAGTTAaacctgttgtgttttttttatttagactCATCACTGCTATTTTAAAATTGCATTTAGTGGCAAATATTTGAACCCCCTGCATCAATGCATAGTTGGATCGTTGAATTGCTGCACAGAAAGTGTTCAGCTGTACACAACTATAACGAGTCAAGTTGTGCAACTGCCCTTTATGTATTGATGGCAGCTGCACTGAAATGAGTGAGGTGTCTGTCACATGGGATGTTTTCACAGTACTTAATACTATAGGAAGGGGGTTCCTGGATACTAAAGATGTTATTTGAAAGATCTGCTTTTGTAGAGCGCTTGGTTTTTCCTCAGATTCTCTGCATTTGATAGTTTTCTGCTGAATCCCAGAACTGTTTTATTTCCAACTGTGTTCTACCGTGTGTTAGGAAACGTTACATGGACATATCAGATTGTCAGATGAGTGGGGTGGGCCTGGGGATAATTAAATAGGGTCAAGATTACAAAGCACTTACTGTAATATACTGGAGTCTGCTTCTTTTGTATAAAGGGGCATCTCCTCAGCGAAAGCTCTTGAGGTTAGGAGTAAAAACCGCACAGCTgtgtaacccccccccccccaatgtcCAGTCCCACATTTTGTCCTGTTTGCCTCTTTAtatcttcatttttaaaaactctttCATGCTGTCTTTGTTAATTTGTTGTTCATATCTCTTGTCTCCCTTCACATTTTCCTCATCTCCTTGTCCTTTTGTCTGTTCtctgtacctttttttttttgttagaccAGTCAGTGCATATGGTCACCAAGAagc

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR052207	Family	Max-like/E-box-binding transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15741	BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-