Gene detail

Detailed information of Csp14G003880.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp14G003880.1	SH2-SH3 ADAPTOR PROTEIN-RELATED	Chr14	9722191	9751123	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp14G003880.1

ACGGAAGTCGGTTGTTCATCCGGTCTAGCTTGAGTGATCGATATGAGAGAGCAGTCAGCCtgcaacagacaaacaagcaaggATAGGTCGAACGTTCATGGCTAGTCCATGTTTTAAAAGAAGGAAAAATAGTTAAACTCAAGGATATGTGgatttaaacattatttttgtcGCTTTTACTCTGGCTTAGTTACTTACTGTTCAGCTCCGGGGTCTTCATTTTGGCGTGTTGAGTGTGTCGCTGTTTGCCCATTCTCGCTGGAGTGAACACTAAGGAGGACTCCATGAAAGATGACAGAGGAGGTGATTGTTGTAGCCAAGTGGGACTACACGGCCCAGCAGGACCAGGAACTTGACATACGTAAAAATGAGCGTCTCTTCCTCCTGGACGACTCAAAGACCTGGTGGCGTGTCCGCAACGGCGCGAACCAAACAGGGTATGTGCCATCAAACTACGTTGAGCGCAAGAACAGCTTGAAGAAAGGCTCgctggtgaagaacattaaagaCACACTGGGTTTGGGAAAAACCAAGAGGAAGACGAGTGCCCGTGATACTTCCCCAACGCCAAGCTCAGACACAGAGTATCCCTCCAATggcagtggaggtggaggggtGGGAGGAGGAGCTGCTGAACGAATCTATGACCTCAACCTCCCTGCTGTGGTCAAGTTTGCCTACATGGCAGAGCGAGATGACGAGCTGACCCTGGTCAAGGGCTCCAGGGTCATTGTGATGGAGAAGTGTAGTGACGGCTGGTGGCGGGGCAGTCAGGCGGGCCGTGTGGGCTGGTTCCCCTCCAATTATGTCCAGGAGGAGCTTGGAGGGGCTGATGACAGAGGGGATGGGGATTCCTCACGGGCCTACCACGGAGGCACCCAAGGGACTTTGTTGGCCAATGGGCGTGCAGGCGGCCGTGTTGAAGTGCTTCACATGGTTCAAACACTCTACCCCTTCAGCTCTGTGACGGAAGAGGAGCTGAATTTTGAGAAAGGAGAGGTTATGGAGGTCGTGGAGAAGCCTGAGAATGATCCAGAGTGGTGGAGGTGTAAGAACTCCCGTGGCATGGTGGGCCTGGTGCCTAAGAACTATGTGATGGTGCTGGACGAGCGTCCTGACCTGCCTACATCGAGCTCCCCGCAGAACCGCCATGTGGCACCGGCGCGTTCGGGGAAGTTCGCTGGGAGGGATTGGTACTACGGCAACATCACCAGACACCAGGCTGAGTGTATACTCAacgagagaggagaggagggagacttCCTCATACGAGACAGCGAATCATcgCCCAGtgatttctctgtgtctctgaagGCAGCCTGTAAGAATAAGCACTTTAAAGTGCAGCAGTCAGACGGAGTGTTCTGTATCGGCCAGCGCAAGTTCAGCTCCATGGATGAACTAGTGGAACACTACAAGAAAGCCCCCATCTTCACCAGCGAACACGGAGAGAAGCTGTACCTGGTCAAAGCGCTGCTGTGATTCATACGTCCTCACACATACACTGGAtctcactcacaaacacacactcgtcATACACACTATACACAGTTATAACGAATGCTACTCCCTGAGCTTCTGAACTCGAGCCTTAGCCCTGGACCCTCTCGCTTTGGCTTCGGTACTACATCCAGATCCTCAGTCACTCCTCAAGTCCGTTGCCCTCCAGTGGTGATCAGCAGTTCTCTTTCTAGCTCCACAACCAAGCAGTCAACCCCGAGACGACACTGTGTCAGGTAAATACCCAGCTgcatcctccatgcacagcacaGTGCATAATAAGCCTATGTCTCTTGGATGTGCTGACATTCGCAGCGGCCACATCTGCTGCCAAAAGAACTCCTGATGCCTTGTTGGGGGTTTAAAGCTCCTTCTGATGTCACACATTATCTCCATTTACCGGCACGCACATTGTTGGTTACACCATTGCTCTTAATCCACACAGGAAGCCAGACGTTTATCAGTTCAAAAAGGACTCAAACCTCTGACGGACGTTACGCTGGTGTCATCCTGCCGAATTGCTGgccattgttttattttgttcatatatttttttttaaagaaatgcttATCCCTCagttaacttttcttttttttttttaagtaaattgAAATCCATTGAATCATTGCTCTTTCATACAATGACTTCACAAAGTGACCAGAATCACTCTCTTGCCTTTTTCTCTTATTTTCATCATTCCTCTTCATGATTTCTCTCCCCATTTGTGTCTTCTGTTGCTTTTTCAAACCCCTCCTTGCTGCTTCTCCACTGACCCGGTCAGTAGTAGTGATGTCTGCATACAATACTTTCTGTGATATTTCTAAGGGGCAGTGTGGGGAGTAATCATGCAATAGGGGAGACCTGATTATCTGTAGAGTTTGAATGTTTATCACTGTAACCAAACGTGCCACCCTGTACCCATACTACTGGCTCCAGGTCTGCACTGCTCTCACTCACCACACTTTGCATTCATTCATAGCTCTGTGCTCACACTTTATATTGTATCACATTGAACATGTCCCTGTTCTGTTCTCCAGTAGTGTCTGTAGCTACATGAGGATACTGACTGAAGAATAATTAATCTTTTTGGTAACAAGTCTTTCGGTAATGATCTGCTCCAGCTCCTATGAATGAAAGAGTAACTCTTCTGATAGAGGATCAGTCAAAGAGGAGTATATCTTTACAAATGTTGTGATTAGAGAAGTGAATTTTGAAAGGAAAGTGTCATTGTACACAAACAAAACTACAATATACTTATTGATTGAGACCCCAATAACAAAGTAGTAATGTAACTAAGAAAGGGTGACATTAAGCTCTACACTAATTATCATAAATGATCAGTCATAGGTTGACAAATGAGTTGGAAACACTTATTAGTAATTCTTAAAAGCAGTCCAACAATAGACTTAGTGTAAGAAAGCCAAATATACGTTATCTGGTCTGTAATGGTAAATACTAGTCCTaccaaatgttttctgtgttaatCTTCTTTCgctatgtgcatttgtttaccAATGGAAGTGTTGTTAATTATGGGGTCCTCAGCTTTTATATGATATATCTGAATGTTATTGAGCATTGTTATTTAATTCTTGTCTccactgtatgtatatattccAAATAAGATGAGGTGCATATATGAATCATTAAGATCAATCTATGGTACTGTACCACCGACAACGTGATGAGAATTGAAATACTTTTGTTCAATAAAATTTTTGAAGAATACTATAATTA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR017304	Family	Cytoplasmic protein NCK	Interproscan
IPR035559	Domain	Nck2, SH3 domain 1	Interproscan
IPR035561	Domain	Nck2, SH3 domain 3	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR051184	Family	Tyrosine-phosphorylated adapter molecule	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016477	Biological Process	cell migration	Interproscan
GO:0030971	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan
GO:0036493	Biological Process	positive regulation of translation in response to endoplasmic reticulum stress	Interproscan
GO:1902237	Biological Process	positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway	Interproscan
GO:1903898	Biological Process	negative regulation of PERK-mediated unfolded protein response	Interproscan
GO:1903912	Biological Process	negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-