Gene detail

Detailed information of Csp13G004360.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp13G004360.1	METHYL-CPG-BINDING PROTEIN	Chr13	9469692	9472975	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp13G004360.1

gctttAACTTCACTTCCACTCACAACAACCATTCCGGTGTTGACATCAGAAAGGAGCAGCAAAAGAAGTGCAGTCACATCAGTCACCGTATTTGTGTTGAATGGTTTTAAGGAAGGAGTTCGAGGATGACCATTATTCATGTATGTCATGTAAACCTTTGTCTGTTATATTAGCATTCTTGTGCTTTGCTGCTAATGGTATGTCCCACGACTATCAACATACTCGATTATGTGGGCatgtatgtgtttttcttttttaattctacGCACATTAGAGTGGCTGCTGACTTGGGAATGAAAACGTTTgctaaacaacaaacaagctAAATCCAATCAGCTCCTACACTGACATATAGAATCCACAACTACCTTCACCGCGCTcataatcaacaaaaatacaccTCTCAAAATGCACCCTGCAAGCTGTGATAACCAGCTGGAGTCCAGTAGAGACACGAGTGAACAAAGTCCCAAGGACGAGGATGATCTGCGCCATACTTCTATAATGCCCCCTGGCTGGATTAGAGAGGTGAGGCAGAGGAAAAGAGGCAAGACAGCAGGCAAAATGGACGTCTACATTATAAGTCCCCAAGGGCTAAAGTTCCGGTCAAGAGCATCCTTGCACGCCTTTCTCCTAAAAAATGGAGGGGGGAACTTAGACATAAGCCTTTTCAATTTCACTGCTTCCAAGGGAGGTGAAATCGCTACTGCaaggagaaggaagaaaaaTCATACAGACGGACAGCAGGAGGATACAACAGAAATACTGGACCCACCTCCAAAAATATCTAAAGAAGCCCCTTCCCCCCTCAAAAGCAccaaagacaaacaagcaaagaGTTCAGAGGATATTAATCATATTAATACTGACATTGTACCACAAACACAAGCTGCATCTTCAACCACAGTGCATGATGTGACATTGCTGAAGAGCCCTCAGAGGGTTGGTCTGCTGAGAGAGAAGCTACTCAGACTTGCTCCCACCAGTAACCAACAAAACACTTCGATTTGCCACAAAGACAAACAGGCAGACTCACAGCCGTCTGCTGTGGCTATGAGTGTTCCTGCCACCGAGACCGAGAATAAGGGTGAGGATGAACgaggtggagaggagagagagattcaCAGAAAAGGTGACAACAAACCTAATTCTCAACTGGATCCTGTTGCTGACAGTCATCGGGATGTGGAAGAGGAGGTGTTGTTACCTGACATCACTGGAGGGAGCAGCACACAAGTGAGAGATTCCCAGAATAAGTCCAAGAGCGTGGACGACAAACGGAAAACAAGTCCATATTTCAGCAGGAAACCCTCCAGAGATGCCATTAGCCCACCCAGGAGGAAGGTCTTCAGGAAGTGGACGCCCCCTCGCTCTCCCTACAACCTGGTACAGGAAACACTTTTCCACGACCCCTGGAAGCTCCTGGTGGCCACCATTTTTCTGAATAAGACCAGTGGTAAGATGGCGATACCAGTACTGTGGCAGTTCTTTGAGTGTTATCCATCTGCAGAGGTGACCAGGGGGGCTGACTGGAAGCCCATGTCTGAACTCATGAAGCCACTGGGCCTGTATGAACTCAGAGCCAAAACGCTCATCCGCTTCTCAGATGAATATCTAACTAAACAGTGGCGTTACCCCATCGAGCTACATGGTATTGGGAAGTATGGCAACGACTCATACAGGATCTTCTGTGTGGGAGAATGGAGACAAGTGACTCCTGAGGATCACATGTTAAACAAATACCACTCCTGGCTGTGGGAGCACCAAGAAACACTTGGAATCTGATAAAAGTATGAGGAGCTGCAAGGAAGGTTTATCATGTTATATTACATAAACGCAGCAGTTATCCACCAATATTAGCATTGTGATGAACTTGAAAAGTGAAACTTGAATTGCTTTACAATTGTACAGTGAAATTATGAAGATATCAGTGTTCTTTAAAACGTTTTACTCAGTGTGTAATAAAATGTGTTAAGTGGTTTAAAAGTTGAATTTGACTAATGAGTGCATTATTTAGTCATTCTGACTGGTTTTCTTATGCC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	MBD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01429	MBD	Methyl-CpG binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001739	Domain	Methyl-CpG DNA binding	Interproscan
IPR011257	Homologous_superfamily	DNA glycosylase	Interproscan
IPR016177	Homologous_superfamily	DNA-binding domain superfamily	Interproscan
IPR017352	Family	Methyl-CpG-binding domain protein 4	Interproscan
IPR045138	Family	Methyl-CpG binding protein MeCP2/MBD4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15074	METHYL-CPG-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008263	Molecular Function	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-