Gene detail

Detailed information of Csp13G002410.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp13G002410.1	TRANSCRIPTION FACTOR CP2	Chr13	4963896	4974390	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp13G002410.1

TTTTAAATTAACACGAAGAAGAGAAACCGGAAATTACGGCAGCTCCTTTTCCAGACGAAGctagataaacaaacaaaagcaatacattattttacatacattttggAGTCTACGTCAATTTTGATGTGTTTCTATTCATAGATATAACTACCATGAACAAATTATTCAATTGAATCCGTAATAACGGAGTCTAAAGGGGCTGCACTATACTTGCTAAGTTAGCTGGCAGGCTATTGAGTTAGCTTGTAGTGGTTAGCTCGACATGTTTATTTTAGTGCTAGAGCGAAGGAGCGCGACATGATGGCATGACACTGCCGCAGTGCTAGCGAGTGGCTCCGCTTTTAATTAAAGGCTGGAAGGTTGTAGGAAACGGGTAGAATTTGGGTTTTAACCAGAACGGCCCTCCGTAAGATCTCCACATCGTCACCATGGCGTGGGCTCTGAAGTTGCCTCTAACGGATGAAGTGATTGAGTCCGGACTGGTCCAGGACTTCGATGCCAGCCTCTCGGGCATTGGTCAAGAGCTCGGTGCTGGGGCATATAGCATGAGCGATGTACTTGCCCTCCCAATCTTCAAGCAGGAGGAGTCCAACCTGCCTCCAGACAGCGACAACAAGATCCTTCCCTTTCAGTATGTTCTGTGTGCAGCTACCTCGCCCGCTGTTAAACTGCATGATGAAACACTCACCTACCTCAACCAAGGCCAGTCTTATGAAATTAGAATGCTTGACAATCGGAAAATTGGGGAACTTCCGGAAATCACAAGTAAAATGGTGAAGAGCATCCTCCGTGTGGTGTTTCATGACCGACGACTTCAATACACAGAGCACCAGCAGCTGGAGGGCTGGCGCTGGAACAGGCCTGGGGATCGCATTCTCGACCTGGATATCCCCATGTCCGTCGGCATAATCGACCCCAGGGCTAACCCTACTCAGCTTAACACTGTGGAGTTCCTTTGGGACCCATCAAAAAGAACCTCAGTTTTTATCCAGGTACACTGCATCAGCACAGAATTCACCATGCGGAAGCACGGAGGAGAAAAGGGTGTGCCTTTCCGCATCCAGATTGACACATTTAAAGAGAATGAGAACGACGAGTACACAGAACACCTCCACTCTGCCTCCTGCCAGGTCAAAGTATTCAAGCCTAAAGGTgcggacagaaagcagaagacTGACAGGGAGAAGATGGAGAAAAGGGCTCcacaggaaaaggaaaagtacCAGCCATCCTATGAAACCACAATCCTGACAGAGTGCTGTCCCTGGCCTGAGGTCACATATGTCAACAACTCCCCGTCTCCCAGCttcaacagcacacacaacagcTTTCCAGTCGCTGAAGGAAATGGATCCCCAAACCACCAGCCTGAGCCTGTCGTTCCGGTAGCAGATAATTTGTTACCTGCTGCAACACCACAAGATGCACAACAGTGGCTTTTAAGAAACCGCTTCTCCCCCTTCTGTCGGCTCTTCACCAACTTCTCAGGGGCGGACCTGTTGAAGCTGACCAGGGAGGATGTCATTCAGATCTGTGGGCCAGCTGATGGTATAAGACTCTTTAATGCACTGAAAGGACGGGTGGTACGCCCGAGGCTGACCATCTACGTCTGCCAGGAGTCTCAGCAGACACGGGAACAGCAAGTGAAACATGAAAACGGAGATGCTGCCGCCAACACTTTCTTTGTATATCACGCCATTTACCTGGAGGAGCTCACAGCTACTGAGCTGACAGAGAAGATCGCTCAGCTCTTTAACATTTCTCCCAGACAGATAAATCAGATCTTTAAACAGGGTCCCACTGGCATCCATGTACTGGTCAGTGACGAGATGATTCAGAACTTCCAGGATGAAGTATGCTTTGTTTTGGACACAATGAAAGATGACACAAATGATGGCTACCACATCATCTTGaagtgaaaagagaaaaaagcttCGCTGTCTTCTATAGACCTGATCCAGTCAGCCCCTCTAGAGCTACATACCTGCACCTGGAATATGTGGAGATGCCCCAAGAAACCTTGTGAGGCTGCTAGGAGGAACATGTGAAGGAAGCACCCGCTCCTCTCCTCACTATACCTTACTGGCTTATTTTTGTGGGAGTGACTGTTGCCTCGGTGAAGCAACACCCTGCCATTGTCTCCTATGAGTGGTTTCATTTTCCTCCGTCGCTTATGTCTCATTATAGAGGTTAGTGGCACTACAGCTGCTATCACTGTTTTTTAGCTGAGCATCTCGTGTGCCAAAGCTTGTTTGTTGTCTCTTTATAAAACCAACAatctaaaaatgaaataaaaaaagatgacgGAAACAAAAGATACTCTGACTTTCAGTCTGCAAAGCACCAAGATTTCATGTCTCTGTGCTAGTTTGTTAGTGCAGTCATAGTCACATCAAAGAACCACAAGAGGAATCATCATCAGCAGTCAGGACATTTAGGGGAACCAGCTGTTCTTAACATCTGTGATTCCTTTGAACGCTAACAATGTCGGCCTGTCACTGGTTTGAACTGTTACTTTTAATTTTGTCCAGACTCCCAAACACTGTTTGGTCCTTATAGTTATTTTGGAGCGCATACTGGCACTCGAGATTGTTAATTATGAATCTTGAATGAGGATGAAACACTGTCTATGTTTGTGATAACAGTGGCAACACCAGCAACCTGTCTCTGGTCCATGTACTTCCTGTCCTTATCCCGTTTTAAGCATTTCatcatgtttaattttagtcatTTCCCAACAGTATTTGTAAATAGATCATTATTTTGAAGTGTTTTCATAAATAACTGTGtgctcaacatttttttttctcaaatcttTCTAACATATTTGCTTCTCTTCATTGTTTTTGGATGGTACCGCTTCCAGATACTAATACATGTGATGAGCTGTTGGTCGCACCAGAGCTGCATGGGAATAAATATGGTTAGTTAATGTTCAGTCTGTTGTACTGCCTACATGAAGCTTGACATTCTAGATATCCATCTTTGCCCCCATCTCATCACCATTATTAAAATACTTACCCA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CP2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04516	CP2	CP2 transcription factor	Family	Interproscan
PF18016	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007604	Domain	CP2 transcription factor	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR037599	Domain	Transcription factor CP2, SAM domain	Interproscan
IPR040167	Family	Transcription factor CP2-like	Interproscan
IPR041418	Domain	SAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-