| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| Csp09G009400.1 | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 | Chr09 | 23146456 | 23243836 | + |
| CDS | |||||
| Csp09G009400.1 | |||||
| Transcript |
| Csp09G009400.1 |
| Protein |
| Csp09G009400.1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Alpha-Helix|UBA |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00627 | UBA | UBA/TS-N domain | Domain | Interproscan |
| PF10427 | Ago_hook | Argonaute hook | Family | Interproscan |
| PF12938 | M_domain | M domain of GW182 | Domain | Interproscan |
| PF16608 | TNRC6-PABC_bdg | TNRC6-PABC binding domain | Disordered | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR009060 | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR015940 | Domain | Ubiquitin-associated domain | Interproscan |
| IPR019486 | Domain | Argonaute hook domain | Interproscan |
| IPR026805 | Domain | GW182, middle domain | Interproscan |
| IPR032226 | Domain | TNRC6, PABC binding domain | Interproscan |
| IPR034927 | Domain | TNRC6C, RNA recognition motif | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR041917 | Domain | Trinucleotide repeat-containing gene 6C protein, UBA domain | Interproscan |
| IPR052068 | Family | GW182 domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13020 | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000932 | Cellular Component | P-body | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005654 | Cellular Component | nucleoplasm | Interproscan |
| GO:0035195 | Biological Process | miRNA-mediated post-transcriptional gene silencing | Interproscan |
| GO:0060213 | Biological Process | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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