Gene detail

Detailed information of Csp08G005850.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp08G005850.1	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Chr08	19362366	19374426	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp08G005850.1

ATGGGCCTCTCACTATCAGTTTGGCTGTGCAACAGGGCGGATGACAGCCCTCCTGCCTCTTCATCAGTTTTTCCTCCGCTGGCTGTCCCAACCTCCTCTCGCCTCACGGTCACTCTGAACTCCTCTCCGGTTGCTCCAGGGGACAGTCGCTCACATTGGAGCTCAATCCACCACTCATCTCATTTCCTGCTCTCCACCTGCAAACAAGAAGTGACGCGTTCACCTGTTGAGCAGAGCAGCGATGGGGCGAGGGCAGAGATGGGGGTGAAGAGTGGTCTTCATGTATGGGAAGTGTTGTGGAACCCCAACCACAGGGGGAGTCATGCGGTCTTGGGAGTTTCCACGCAGAACTGCCCTCTGCATGCTTCAGGGTACAACGTGCTTGTGGGTGGAGAATCACAGTCCTGGGGTTGGGAACTCAAAACCAATCAGCTCTGGCATTCTGGACAGAGTCTTGGACTTTACCCAAGAAAGCAGAGAAGGTGTCATTCTGAGGCTGTGGAGGATTTTAGGCCACAGTCTTCCATTTCGTCTCACTCAAAGATGCCACAAGCATCTCTCCCCATCCCTGAGCGCATCCTGCTGCTCCTGGATGCTGATGCAGGAACTCTAGGATTTATTGTTGATGGCAGCTTCCTGGGTGTAGCTTTTAAAGACCTCCCTCTTGGAGTGGAGTTGTTCCCAGCAGTGAGCAGTGTAAGAGGGGGAGCTACCATACGTCTGCGTTACCTTAATGGTGCCACTCTCATCCAAGAGGTTAATCCCCATGTTATAATTACCAGTGCAAAGCAGGAGCACTGTGTGACCCGCTTCCTGCAACAACTTGGTTCAAACCCAGACTACAAACCAGAGGTTGTTACATATCCATATGTTGACTTTGGTCTGGAGGTCAGTAAACAGAGGCTACTTTCTGCCAACCTGCCTTTTCTTCCCGCCTCCATTTCAGAGAGGGACAAAATGTCCCACCTCTCCTCCTGTATCTCCTTTGACTCACCCCTGATGCTGAGGACAGTAGGTGCTCTGCTGAAATGCCTGGACAGGAGGAGAGTGGGAGTGGAGCTGGAAGACAGCAGTGTTAGAGTTCCTATCCTGCAGTTCCACACCTACACGCTTAAAGGTGTTATTTGCATTGACCGGGACACCTACAGTGTACTGCAGATCTTCAAATCAGAGCAGCACCCCTCTGTGTACAAACTGCATTCAGGTGAAAAAGAAGGACTCAGTCTTTATGGGATACTGAACCGCTGCAGGTGCAAGTTCGGGTCTAAATTGCTACGCCAGTGGTTTCTGCGCCCAACTCAGGACTTGGCCGTGTTACACAGGAGACAGGAAGTGATACGTTTCTTCACGTCACCGCAGAACTCTGATGCTCTGAGAACACTGCAGGCCTCACTGCGTAGCATCAGTAACATACCAACTCTTCTGCGCAGGATGTCTCTCTCTCACACCAAAGTCACCAACTGGCAGAGCCTCTACAAGACATTGTACAGTGCAGTGTGTATCAGGGACACAGTGCGACAACTGCCTCAGTCCATTCAGCTTTTTCAAGATATCAGTGAAGGGTTCTCTGATGACCTCCACCATATTGCCTCCCTCATCAACCGAGTTGTGGATTTTGAAACCTGCGTAGCTGAGAACCGTTTCACCATCAAGCCGAATGTGGACCCAGCAATTGATGAGAAGAAGAGAAGGATGATGGGGTTGTCGGACTTCCTAACAGATGTAGCAAGACAAGAGCTGGAACACCTGGATGCTCGCATCCCTTCCTGCTGTGTCATCTACATCCCTCTGATTGGTTTCCTGCTCTCTGTCCCTCGCCTGCCCAGCATGGTGGAGAAAGAAGATTTTGAGATAGAGGAGCTTGATTTTATGTTCCTATCAGAGGACCGTCTGCACTACCGCAGCAAGAGAACGAAAGAGCTAGACGACCTCCTAGGAGACTTGCACTGTGACATTAGAGACATGGAGACAGGCGTAATGACACAGTTGCAGAACACAATCCTCGAGAAGAGTGCCTCCCTCTACAAGATTCTGGATCTCATAGCTGAGCTAGACTGTCTGATGGCTATGAGCAGCGCTTCCCAAGAGTACGGTTACACCTCACCCAAACTAGCCAGCCACAGGTGGATAACAGTCACACAGGGCAGACATCCTCTGTTAGAGCTGTGCTCTCCTGTGTTTGTGGCCAACTCCTTCCAGAGCTCAGAGTCCCAGGGCAGAATCAAGATCATCACTGGCCCCAACTCATCTGGCAAGAGTATCTACCTCAAACAGGTGGGTTTGATCGTGTTCATGGCTCTGATTGGCTCAGATGTGCCCGCAAAGGATGCAGAGATCGGTCTGGTGGATGGGATCTTTACCCGCATGCAGAGTAGAGAGTCTGTGTCTGTGGGCCTCAGTACCTTCATGATAGACCTCAACCAGATGGCCCAGGCTCTCAACAGCAGTACTGGCAACTCATTAGTTCTCATCGATGAATTTGGAAAAGGAACTAACACAGTGGATGGACTGTCCCTGCTTGCCGCATCGATCTCTCATTGGATGAGGAAAGCTCCAGTGGATGTACCCCATGTCCTTTTGGCTACTAATTTCCACAGCTTGCTGCAGCTGGGCCTACTACCCTCCTCTGGCCTGCTGTCTCTTCTGACTCTAGAGACAGCAGTGGACGGGGACGAGTTGGTGTTTCTGTACCAACTGAAAGAAGGGATTTGCCAGTCCAGCTATGCTGCCAACATCGCTACACTGGCAGGCCTGCCAACTAGCCTTGTACAGAGAGGAGTGGAGGTGTCTGAACTGTACAGGACAGGAAGGTCCATCCAACGCATTGACAAAGCGTCATCGGATGAGCAGGCAAATAGGTGCAGGTCGGTGGTGGAGAAGTTCATGAGGCTCGACTTGGAGGACATAGACTTGGATCTTCAGCATTTCATGAAAGAAGAGCTCCTGCCCTCTGCCGGGGAGCTGCTGGACCGCAGCTGA

Transcript

Csp08G005850.1

ATGGGCCTCTCACTATCAGTTTGGCTGTGCAACAGGGCGGATGACAGCCCTCCTGCCTCTTCATCAGTTTTTCCTCCGCTGGCTGTCCCAACCTCCTCTCGCCTCACGGTCACTCTGAACTCCTCTCCGGTTGCTCCAGGGGACAGTCGCTCACATTGGAGCTCAATCCACCACTCATCTCATTTCCTGCTCTCCACCTGCAAACAAGAAGTGACGCGTTCACCTGTTGAGCAGAGCAGCGATGGGGCGAGGGCAGAGATGGGGGTGAAGAGTGGTCTTCATGTATGGGAAGTGTTGTGGAACCCCAACCACAGGGGGAGTCATGCGGTCTTGGGAGTTTCCACGCAGAACTGCCCTCTGCATGCTTCAGGGTACAACGTGCTTGTGGGTGGAGAATCACAGTCCTGGGGTTGGGAACTCAAAACCAATCAGCTCTGGCATTCTGGACAGAGTCTTGGACTTTACCCAAGAAAGCAGAGAAGGTGTCATTCTGAGGCTGTGGAGGATTTTAGGCCACAGTCTTCCATTTCGTCTCACTCAAAGATGCCACAAGCATCTCTCCCCATCCCTGAGCGCATCCTGCTGCTCCTGGATGCTGATGCAGGAACTCTAGGATTTATTGTTGATGGCAGCTTCCTGGGTGTAGCTTTTAAAGACCTCCCTCTTGGAGTGGAGTTGTTCCCAGCAGTGAGCAGTGTAAGAGGGGGAGCTACCATACGTCTGCGTTACCTTAATGGTGCCACTCTCATCCAAGAGGTTAATCCCCATGTTATAATTACCAGTGCAAAGCAGGAGCACTGTGTGACCCGCTTCCTGCAACAACTTGGTTCAAACCCAGACTACAAACCAGAGGTTGTTACATATCCATATGTTGACTTTGGTCTGGAGGTCAGTAAACAGAGGCTACTTTCTGCCAACCTGCCTTTTCTTCCCGCCTCCATTTCAGAGAGGGACAAAATGTCCCACCTCTCCTCCTGTATCTCCTTTGACTCACCCCTGATGCTGAGGACAGTAGGTGCTCTGCTGAAATGCCTGGACAGGAGGAGAGTGGGAGTGGAGCTGGAAGACAGCAGTGTTAGAGTTCCTATCCTGCAGTTCCACACCTACACGCTTAAAGGTGTTATTTGCATTGACCGGGACACCTACAgTGTACTGCAGATCTTCAAATCAGAGCAGCACCCCTCTGTGTACAAACTGCATTCAGGTGAAAAAGAAGGACTCAGTCTTTATGGGATACTGAACCGCTGCAGGTGCAAGTTCGGGTCTAAATTGCTACGCCAGTGGTTTCTGCGCCCAACTCAGGACTTGGCCGTGTTACACAGGAGACAGGAAGTGATACGTTTCTTCACGTCACCGCAGAACTCTGATGCTCTGAGAACACTGCAGGCCTCACTGCGTAGCATCAGTAACATACCAacTCTTCTGCGCaggatgtctctctctcacaccaaAGTCACCAACTGGCAGAGCCTCTACAAGACATTGTACAGTGCAGTGTGTATCAGGGACACAGTGCGACAACTGCCTCAGTCCATTCAGCTTTTTCAAGATATCAGTGAAGGGTTCTCTGATGACCTCCACCATATTGCCTCCCTCATCAACCGAGTTGTGGATTTTGAAACCTGCGTAGCTGAGAACCGTTTCACCATCAAGCCGAATGTGGACCCAGCAATTGATGAGAAGAAGAGAAGGATGATGGGGTTGTCGGACTTCCTAACAGATGTAGCAAGACAAGAGCTGGAACACCTGGATGCTCGCATCCCTTCCTGCTGTGTCATCTACATCCCTCTGATTGGTTTCCTGCTCTCTGTCCCTCGCCTGCCCAGCATGGTGGAGAAAGAAGATTTTGAGATAGAGGAGCTTGATTTTATGTTCCTATCAGAGGACCGTCTGCACTACCGCAGCAAGAGAACGAAAGAGCTAGACGACCTCCTAGGAGACTTGCACTGTGACATTAGAGacatggagacaGGCGTAATGACACAGTTGCAGAACACAATCCTCGAGAAGAGTGCCTCCCTCTACAAGATTCTGGATCTCATAGCTGAGCTAGACTGTCTGATGGCTATGAGCAGCGCTTCCCAAGAGTACGGTTACACCTCACCCAAACTAGCCAGCCACAGGTGGATAACAGTCACACAGGGCAGACATCCTCTGTTAGAGCTGTGCTCTCCTGTGTTTGTGGCCAACTCCTTCCAGAGCTCAGAGTCCCAGGGCAGAATCAAGATCATCACTGGCCCCAACTCATCTGGCAAGAGTATCTACCTCAAACAGGTGGGTTTGATCGTGTTCAtggctctgattggctcagatgtGCCCGCAAAGGATGCAGAGATCGGTCTGGTGGATGGGATCTTTACCCGCATGCAGAGTAGAGAGTCTGTGTCTGTGGGCCTCAGTACCTTCATGATAGACCTCAACCAGATGGCCCAGGCTCTCAACAGCAGTACTGGCAACTCATTAGTTCTCATCGATGAATTTGGAAAAGGAACTAACACAGTGGATGGACTGTCCCTGCTTGCCGCATCGATCTCTCATTGGATGAGGAAAGCTCCAGTGGATGTACCCCATGTCCTTTTGGCTACTAATTTCCACAGCTTGCTGCAGCTGGGCCTACTACCCTCCTCTGGCCTGCTGTCTCTTCTGacTCTAGAGACAGCAGTGGACGGGGACGAGTTGGTGTTTCTGTACCAACTGAAAGAAGGGATTTGCCAGTCCAGCTATGCTGCCAACATCGCTACACTGGCAGGCCTGCCAACTAGCCTTGTACAGAGAGGAGtggagGTGTCTGAACTGTACAGGACAGGAAGGTCCATCCAACGCATTGACAAAGCGTCATCGGATGAGCAGGCAAATAGGTGCAGGTCGGTGGTGGAGAAGTTCATGAGGCTCGACTTGGAGGACATAGACTTGGATCTTCAGCATTTCATGAAAGAAGAGCTCCTGCCCTCTGCCGGGGAGCTGCTGGACCGCAGCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF00622	SPRY	SPRY domain	Family	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0051026	Biological Process	chiasma assembly	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-