| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| Csp07G003200.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE | Chr07 | 15138549 | 15147041 | + |
| CDS | |||||
| Csp07G003200.1 | |||||
| Transcript |
| Csp07G003200.1 |
| Protein |
| Csp07G003200.1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|ZnF|NZF |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | Domain | Interproscan |
| PF06831 | H2TH | Formamidopyrimidine-DNA glycosylase H2TH domain | Domain | Interproscan |
| PF06839 | zf-GRF | GRF zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000214 | Domain | Zinc finger, DNA glycosylase/AP lyase-type | Interproscan |
| IPR001876 | Domain | Zinc finger, RanBP2-type | Interproscan |
| IPR010666 | Domain | Zinc finger, GRF-type | Interproscan |
| IPR010979 | Homologous_superfamily | Small ribosomal subunit protein uS13-like, H2TH | Interproscan |
| IPR012319 | Domain | Formamidopyrimidine-DNA glycosylase, catalytic domain | Interproscan |
| IPR015886 | Domain | DNA glycosylase/AP lyase, H2TH DNA-binding | Interproscan |
| IPR015887 | Binding_site | DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site | Interproscan |
| IPR035937 | Homologous_superfamily | MutM-like, N-terminal | Interproscan |
| IPR036443 | Homologous_superfamily | Zinc finger, RanBP2-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22993 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003684 | Molecular Function | damaged DNA binding | Interproscan |
| GO:0003906 | Molecular Function | DNA-(apurinic or apyrimidinic site) endonuclease activity | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0006284 | Biological Process | base-excision repair | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0016799 | Molecular Function | hydrolase activity, hydrolyzing N-glycosyl compounds | Interproscan |
| GO:0019104 | Molecular Function | DNA N-glycosylase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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