Gene detail

Detailed information of Csp07G000940.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp07G000940.1	ATP-DEPENDENT RNA HELICASE	Chr07	6601000	6605836	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp07G000940.1

ATGGCAGAATTTGACACCCTGGTAATGAGACCAGGAAAACTCTGCAGGTACGGGTTTGATAGGGAGCGAAGCAAGCAGTCTGGAGGAGGTGAATTCGGGGCCACTTTGGAACAGCTCCTCCACCAGGTTTTCAGCGAGAGCTATGGCCAGAAAACAGTTTCCCCTGATGATCTTGAAGAGGTTACAATGGATGAATGTTTGAGGCAGAGGCAGGAAGAAGCTCTGGGTCTAGCTACCATTTATGGTGAACGCTTCAGTGAGCGCATTGCCAATGCAGTCTGGACGGTATCCCTGGACCTCTCGTTCCTCTCAGACAACGCTGCCGGGAATGGCAGTCGAGACAGGAGTCGAGGTGGTGGAGGAGCTGTTAATGTCTGCGACGTCTGCCAATTCTACCTGAAAGGGCAAAGCTGCCGGTTTGGGGACAAATGCAAGTTTAAGCACCAGCTCCCTACCAAAGGGAGATCAGGGGCTGGTTCCCCAGACTTGATGGGTCCGAGCCAGCCTGGCTTCAGCAGCTATTCTCCTCCTGCATATGAACTAGAGATACGCTTCCCCAAAGGAAACCGTTACCCATTTCAGGCACCGATGGTCGCCTTCAGCACCACTGACGAGTCCATCGCGGCTGCAGGGAGGCTCAACGTGACTGAAAGCTTGTTTGGAGAAGCGCTGGCTGCTGCAACGATCAGCGAACCTGTTGTTTACGCTCTGATTACCGTATGTGAGGATGAAACTATCATGACAGAACTGCTGGCTATCAGTCATCACAAATACAGCACACCTCTGCCTGTTCGTTTGGTTCGTCCACCCTCTCTTGCCATAGCAAATTCCAAGAGTGTGAGGAGCAGAGCTTCTGAGGAAAGCAGGAGCAGTAATCATACCACCAGCAGATGGACTGCTCCACCTAACAACCAGAGACCAGTAGACTTGAAAGAGACAGCAGAGGCAGACAAGCTGGATGAGAGGGATGAGAGAGATGAGGATGAGGCTGTTCCCATCGAGAGCGGGAGTTATGCCAGTCTGAGGAAGAGGTTGGTGAATAAATACAACCTGAAGATAGACAACCCACTGAAAGAAAACGACAAGCTGTGTCGAGAGTTTCAGAAGAAGCAGTCATCCAGGCATTTCATATCCATGTTGGAGCAGAGGAGGAAGCTGCCGGCTTGGCAAAAGAAAGCAAACATCCTCAACCTGTTAGACCAGTGCCAGGTGCTGGTGGTCAGTGGGATGACTGGATGTGGTAAGACCCCTCAGATCCCTCAGTTCATTCTGGACGCCTCATTAAATGGTCGAGCCGAGCAGGTGGCCAACATCCTCTGTACGCAGCCACGCCGCATCTCTGCCATCTCTGTGGCCCAAAGAGTGGCACAGGAGCCTGCAGAGCGTCTGGGCCACTCAGTGGGCTACCAGATCCGCCTGGAGTGTGTTAGGACGTCTGCCACCAGACTGCTGTACTGCACCACAGGCGTGTTACTGAGGAGACTGGTGGGTGAGGCGGATCTCAAAGGCGTCACACATGTCATTGTGGATGAGGTGCACGAACGGACTGAGGAGAGCGACTTCCTGCTGAAGGACTTTGAAAAACTCCATCTTCCAGACCAGGAGCTCAGCCTGAAGGAGCTCGCCATCAGATACAAAGATACTGAGGAGTCTGTGTTGAAGACCATTGCTGCGATGGACCTGGACAAGATCAACAAGGACCTGGTGGAGAGCCTGCTGGTGTGGATTGTGACGGGAGAACACGACTACCCTCCAGGTGCAGTTCTCAAGTTCCTGCCAGGCCTGGCTGAGATAAAGATGCTCTACAATAAGCTCATGTCCAAGAATCTGTTCAAGAGCAGTCATAAATCCAGGTGTGTGGTGTACCCGCTGCACTCAAGCCTGTCAGGTGAGGAGCAGCAAGCGGTTTTCATCCGGCCCCCAAAGGGCGTCACAAAGATGATCCTCTCCACCAACATTGCTGAGACCTCGATAACCATTGACGACATGGTATATGTCATTGACTCCGGCAAGATAAAGGAGAAAAAGTACGATGCATCTAGAAGCATGGAGATCCTGGAGGATTCGTGGGTTTCTAGGGCCAACGTGCTGCAGAGGAAGGGTCGAGCGGGTCGCGTGGCCAGGGGGGTCTGCTTTCACCTCTTCACAAGCCACCACTTCCATCACCAGCTGGCTGAGCATCAGCTGCCTGAGATCAAGAGAGTGCCTCTGGGGTAG

Transcript

Csp07G000940.1

ATGGCAGAATTTGACACCCTGGTAATGAGACCAGGAAAACTCTGCAGGTACGGGTTTGATAGGGAGCGAAGCAAGCAGTCTGGAGGAGGTGAATTCGGGGCCACTTTGGAACAGCTCCTCCACCAGGTTTTCAGCGAGAGCTATGGCCAGAAAACAGTTTCCCCTGATGATCTTGAAGAGGTTACAATGGATGAATGTTTGAGGCAGAGGCAGGAAGAAGCTCTGGGTCTAGCTACCATTTATGGTGAACGCTTCAGTGAGCGCATTGCCAATGCAGTCTGGACGGTATCCCTGGACCTCTCGTTCCTCTCAGACAACGCTGCCGGGAATGGCAGTCGAGACAGGAGTCgaggtggtggaggagctgTTAATGTCTGCGACGTCTGCCAATTCTACCTGAAAGGGCAAAGCTGCCGGTTTGGGGACAAATGCAAGTTTAAGCACCAGCTCCCTACCAAAGGGAGATCAGGGGCTGGTTCCCCAGACTTGATGGGTCCGAGCCAGCCTGGCTTCAGCAGCTATTCTCCTCCTGCATATGAACTAGAGATACGCTTCCCCAAAGGAAACCGTTACCCATTTCAGGCACCGATGGTCGCCTTCAGCACCACTGACGAGTCCATCGCGGCTGCAGGGAGGCTCAACGTGACTGAAAGCTTGTTTGGAGAAGCGCTGGCTGCTGCAACGATCAGCGAACCTGTTGTTTACGCTCTGATTACCGTATGTGAGGATGAAACTATCATGACAGAACTGCTGGCTATCAGTCATCACAAATACAGCACACCTCTGCCTGTTCGTTTGGTTCGTCCACCCTCTCTTGCCATAGCAAATTCCAAGAGTGTGAGGAGCAGAGCTTCTGAGGAAAGCAGGAGCAGTAATCATACCACCAGCAGATGGACTGCTCCACCTAACAACCAGAGACCAGTAGACTTGAAAGAGACAGCAGAGGCAGACAAGCTGGATGAGAGGGATGAGAGAGATGAGGATGAGGCTGTTCCCATCGAGAGCGGGAGTTATGCCAGTCTGAGGAAGAGGTTGGTGAATAAATACAACCTGAAGATAGACAACCCACTGAAAGAAAACGACAAGCTGTGTCGAGAGTTTCAGAAGAAGCAGTCATCCAGGCATTTCATATCCATGttggagcagaggaggaagctgCCGGCTTGGCAAAAGAAAGCAAACATCCTCAACCTGTTAGACCAGTGCCAGGTGCTGGTGGTCAGTGGGATGACTGGATGTGGTAAGACCCCTCAGATCCCTCAGTTCATTCTGGACGCCTCATTAAATGGTCGAGCCGAGCAGGTGGCCAACATCCTCTGTACGCAGCCACGCCGCATCTCTGCCATCTCTGTGGCCCAAAGAGTGGCACAGGAGCCTGCAGAGCGTCTGGGCCACTCAGTGGGCTACCAGATCCGCCTGGAGTGTGTTAGGACGTCTGCCACCAGACTGCTGTACTGCACCACAGGCGTGTTACTGAGGAGACTGGTGGGTGAGGCGGATCTCAAAGGCgtcacacatgtcattgtggaTGAGGTGCACGAACGGACTGAGGAGAGCGACTTCCTGCTGAAGGACTTTGAAAAACTCCATCTTCCAGACCAGGAGCTCAGCCTGAAGGAGCTCGCCATCAGATACAAAGATACTGAGGAGTCTGTGTTGAAGACCATTGCTGCGATGGACCTGGACAAGATCAACAAGGACCTGGTGGAGAGCCTGCTGGTGTGGATTGTGACGGGAGAACACGACTACCCTCCAGGTGCAGTTCTCAAGTTCCTGCCAGGCCTGGCTGAGATAAAGATGCTCTACAATAAGCTCATGTCCAAGAATCTGTTCAAGAGCAGTCATAAATCCAGGTGTGTGGTGTACCCGCTGCACTCAAGCCTGTCAGGTGAGGAGCAGCAAGCGGTTTTCATCCGGCCCCCAAAGGGCGTCACAAAGATGATCCTCTCCACCAACATTGCTGAGACCTCGATAACCATTGACGACATGGTATATGTCATTGACTCCGGCAAGATAAAGGAGAAAAAGTACGATGCATCTAGAAGCATGGAGATCCTGGAGGATTCGTGGGTTTCTAGGGCCAACGTGCTGCAGAGGAAGGGTCGAGCGGGTCGCGTGGCCAGGGGGGTCTGCTTTCACCTCTTCACAAGCCACCACTTCCATCACCAGCTGGCTGAGCATCAGCTGCCTGAGATCAAGAGAGTGCCTCTGGGGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF05773	RWD	RWD domain	Domain	Interproscan
PF18044	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR041367	Domain	E3 ligase, CCCH-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-