Gene detail

Detailed information of Csp06G002390.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp06G002390.1	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	Chr06	9199916	9209110	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp06G002390.1

CTAACTCTGACGTCATCTTCATAAGACGGAAGTGGTGCGGAAGTAAAACTGTAGTATTATAGATCCTGATAGTGACATGACAAATCAAACTGCAACCTGAAAagcatttatttttgtaaagcCAAGAAGCGCAAAAGATTTTTGGGGACTACATCACAGACAGGAAGGATGCATGGCCGAGTGAAGATTAAATCTACagcacagcaggaggaggagaaaagaaaggagCGCGAGAAGAAACTGAAAATATACGTGGCTGCACGAGATGCCTGTTTTTCTAAGAGGACAGAGGGTGTCTGGGATGATGAAGCACTCCAGCTGACCCAGCAGCTGCTGTCAGCCAATCCTGACTTTGCAACCCTCTGGAACTACAGAAGGGAGATCCTAATGCACCTGGAGACTGTGAAGGATGAGGATGAAGTACAAAAGGTTTATGAAGCTGAGCTGTCATTTCTGGAGTCTTGTCTGAAGGTGAACCCGAAGTCCTATGGCAGCTGGCACCACCGATGTTGGGTCTCATCACGGTTGCCTCGACCAAACTGGGCCAGAGAGCTGAGCCTTTGTGATCGCTGCCTCAGCCTGGACGACCGCAACTTCCATTGCTGGGATTATCGCCGGATGGTTGTGAAGATGTTTGGTGTGCCTGTGGATCAGGAATTGGGGTTTACAGATCGTCTTATTGGCTCCAACTTCTCCAACTACTCCAGCTGGCACTATCGAAGCACCCTACTGCCACTGCTTCACCCGGAGTCTCCTGAACCCCCGTCACTGTGCCACGAGGCTTCTCATTCCTCCCCTCCACCTTCTCCGCCAACCCACTCCCATCGCGTCTGTGAGGAGCAACTCCTCAAAGAATATGAGCTTGTACGGAACGCTTTCTTCACTGACCCAAACGACCAGAGTGCTTGGTTCTACTATCGCTGGTTGCTTGGCAGAGCGGAACGTGAGGAGATGATTAGCTGTGTGTATGTCAGTCGGGATGAGGAGAGAGTGGCTGTTGCCTTCTCCAGGCCTGTTAATGCCCAGTCTGTCGGCCTGCTGCTGGTGCTCGATGGTCAGCCTCGGAGAGTGGAGTGGAGGAGCGTCCATCCTCACTTTAAACACAGCCCTGTATTAATCTGTGACCTTCCTCCTGGAACGATTAGCGACATCACAAATGAACACAACCTGACTGTGCAGTGGACTGAAAAATACACTCACAGAGACTGTGCTCTGTACACAGGTCGAGCTGAGAGTTGGTGTCGGGACTCTGCCACAGATCAGGAACTTTTCAGTAGGAGTGAACTGTCTGTAGAGAAGACCTCAGTGTTACAGTCGGAGCTGCAATCATGCAACCAGCTACAAGAGCTGGAGCCACTCAATAAGTGGTGCTTACTGACAATTATCCTCCTGATGAGGGCACTAGACCCTCTGGGATATGAAAAGGAGACACTCGCCCATTTCCAAACACTGAAAGAAGTAGACTCCATGCGCTCTGCGTATTACAGTGACCTGTGTAGCAAGTTTATCATTGAGAACACCGTCCTGAAAATGGAGTACGCTGAAGTTCGCGTCTTCAGTATTTCTGACAAGAACCTGACCACCTTATGTCACCTAGACCAGCTGTTATTGGTCACCCATATCAATCTGTCCTCTAATCAGCTGGAGCGGCTCCCTCCCCAGTTCGCCATGTTGCAGTGCCTTGAGGTCTTGGAGGCTGATAACAACTTCATTGGAAACCTGGAAGGACTTTATCACCTTCCCAAACTGGAAGAAGTCCTCTTGAAGAACAACAAAATCTCTACTTTGGCAGATCTTCAGCCACTGGCCTCCTGCCCCAAGCTGAAGCGCCTTGATCTCCGCGGCAACCCTGTCACTCAGATGGCCAGCATTGAGGCGGAGTTGGCTGAGCTGCTGCCCTCAGTCACAGACCTCCTGCTCTGATGAGGAATCACTGCCACATCATCCCGTCGTTCTGTTGTCCACTGCATCCTCgggtgtgttttgtttgtgaaaGAGCAAGCGGGTGTTTTTCAAACATCTCGTGTCTCTTGTCTCCACTTATTTGGAAGGACGTCAATCACATTTCCCCTGAGGATCAGAAAGCCTGATGCTTCAGAGCATATGTCAGAAACCTCTGTAATACCTTCATTGAAATGTctaggtgtgcgtgtgtgagaaataacccaTGTTGCATTTCttaaactgtgtgtttgtgtgtgtacagatATCGTTTTTACAACAAATGCATGCAGAAACACCTGATTCTGGAATAAATTGGACTAGATGGATTATTGCTTCTTTGAGTTTTAAAGCAGTTGAAGTCAGAGAAATGATTTTAACTAATGGTCAGAGCATCACacaagtctcttttttttttaaaggttgtGTAAAGTGTTTATTGCATGACACTGCACTGTTGCAAAGTAAGTCACCGATCCAGTAGTAAAACAGAACACGTCACTGCCACATTGTGTCACCGCTTCtttacttgttttgtttgtcagatGTAAAGGCATTCCTGAACGCACCTTAATCCTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01239	PPTA	Protein prenyltransferase alpha subunit repeat	Repeat	Interproscan
PF07711	RabGGT_insert	Rab geranylgeranyl transferase alpha-subunit, insert domain	Domain	Interproscan
PF14580	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002088	Repeat	Protein prenyltransferase, alpha subunit	Interproscan
IPR009087	Domain	Rab geranylgeranyltransferase, alpha subunit, insert-domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036254	Homologous_superfamily	Rab geranylgeranyltransferase, alpha subunit, insert-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11129	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004663	Molecular Function	Rab geranylgeranyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005968	Cellular Component	Rab-protein geranylgeranyltransferase complex	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008318	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342	Biological Process	protein prenylation	Interproscan
GO:0018344	Biological Process	protein geranylgeranylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-