Gene detail

Detailed information of Csp05G006960.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp05G006960.1	IKB KINASE	Chr05	15751231	15771065	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp05G006960.1

ATGAATCGAGTTCCCCTGCAGCAACCGCAGAGCTGTGGGTCCTGGGAGCTGAAGGAGCGACTGGGCACTGGAGGATTTGGGAATGTCACAAGATGGCAAAACAAGGACACAGAGGAACAAATCGCTATAAAGCAGTGCCGTCAGGAGCTGAGCGAGAGAAACAAAGAGAGATGGTGTCTGGAGATCCAGATCATGAAGAGGTTGGATCATGTCAACGTTGTTGCAGCCAGAGAGGTTCCTGAGGGAATGGAGAAACTGGTGGCCACCAATGACCTGCCTCTTCTGGCAATGGAGTATTGTCAGGGAGGGGATCTGAGAAAGTATCTGAACCTCTTGGAGAACCGCTGTGGAATGAGGGAGGGCTCCGTTTTGATTCTGTTATGTGACATTTCTTCGGCTTTAACCTACCTCCATAAGAAGAGGATCATCCACAGAGATCTGAAACCGGAAAACATTGTGCTGCAACAGGGAGAGAAGAGATTGATCCACAAGATTATAGATCTTGGCTACGCTAAAGAGCTGGACCAGAGCAGCCTCTGCACCTCATTTGTGGGAACACTTCAGTACTTGGCTCCAGAGCTGATTGAGAGACAGAAGTACACGGTCACGGTGGACTACTGGAGCTTTGGGACTTTGGTGTTTGAGTGCATCACAGGATTTCGCCCTTTCTTACCAACCTGGCAACCTGTTCCTTGGCACAATAAACTGAGGCTGAAGCAGGATGATGACATTGTTGTCTATGAGGACCTCACAGGGGAGGTTCGCTTCTCTAAACATCTGCCGCAGCCCAACAACCTCAACAGTCTGTTATTACAGAAAATGGAGAGGTGGCTGCAGCTGATGTTAAAGTGGTCTCCTCAGGAGAGAGGAAAAGACCCTGCGGCTACGCCCAGCGACTGCTTCTCCCAGCTGGAGGTCATACTGCAGCTCAAGCTGGTTCATGTCCTGAACATGATGTCTGCTAAGATCCTGACATACTCGGTGTCGGACGATGAAACTGTGGCCGACCTGCAGCTGAGGATAGAAAAAGACACCAGCATCCCTGCAGCCAATCAGGAGCTGCTGCTGGAGGCCGGGTTAGCCTTGGAGCCTCATGGACTAGCTACACAGTGTGCCATAGATTACTCAGATATAGATGGGCGACGGACGGACCTGCCTCTGGTCTTCCTGTTTGATCGTTCCTCTTGCAGTTATGAACCTCAGTTTGCTCCTCGCACCCTTCCAGAAAACATCCGCTTTGTCCAAACTGACCCTAAGCACGTTCTGGCTTATAGCCCTCTGAGGAGGACTTGCGGTCAGGCATGGCACACCATCCGCTCCCTGAAGGAAGACTGGCAAAGACTGCAGCAGGGCCAGAAAGCTGCTATCATGAGCCTGCTGAGACACAACTCTTCACTGTCCAAACAGAAGAATGAGATGGTGTCCATGTACCAGAGACTGATGGCCAAGCTGGACTTCTTCACCACCAGCCTTCACATAGACATGGACAAATATCAGGAGCAAACAGCCACCGGGATCGCGTCAGAGAAACTCCTTGGTGTGTGGAGGGAGATGGAGCAGACTGCTGTCAGTTGTGGTCAGGCCAAGGTGAGTGAACTTGAGGAGGAGATGATGCAGCTGCAGCCAGGCATAGTGGATGTGCAGAGACAGCCGTGGAGGAGTGGAGAGGCCCTGGACACACTTGAAGGAAAGGCCATGGAGCTGTTCCGGAAGCTCAGAGAGAAACCCAGAGACCAGAGGTGTTCAGGGGACAGTCAGGAGGTGGTGCGCTTGGTGGTTCAGGCTGTGCAGTTCTACGAGAGAAAGCTCAGAGACTTCTACACACACCTCAGTAAAACAGCGGTGTGCCGCCAGCGTGTGATGGAGCTGCTGCCAAAGGTGGAGGGTGTGGTCCAGAGGATGGCGGAGAGTGAACAAGTCTTGATGAGTCTGCAGGAGAAACGGCAGAGGGAACTGTGGAACCTGCTCAAAGTTGCCTGTAGTAAAGTTCGCAGCCCAGTGAGTGGAAGTCCTGATGGGTTAAGAACGCCCTCCTCAGTGCCGCCTTTACTGACCCCTAGACACAGCTTACAACAGTTTGACGAGTCTCTTGTGGAGGAGAGCAGGACGTTTGAGAGTCGACTCCAGAGTTTACTGCACGACACTATCCAGGAATCAGAGAACAGTATGGAGATGTTAAGCGAGTGGACGTGGCTGCGGGGAGGTCAGAATTTCTCCAGCGATCTCTCCTAA

Transcript

Csp05G006960.1

TTCAGGTTTACAGGAAATATGAGAATCAGGAAGTAGAAAGTTTTGAGACTTGTTCTGTCGCCAAAAATATTACTGAACAGTTAAAAGTTTATCTCGTTTAAAGGCTCAATACGCAAAGTgtccaaataaaaacagatgtgaACGCGTGCCAGCGCTGCCTACGAAGTCTAAGGAAAAGCTGATGAAACCATGAATCGAGTTCCCCTGCAGCAACCGCAGAGCTGTGGGTCCTGGGAGCTGAAGGAGCGACTGGGCACTGGAGGATTTGGGAATGTCACAAGATGGCAAAACAAGGACACAGAGGAACAAATCGCTATAAAGCAGTGCCGTCAGGAGCTGAgcgagagaaacaaagagagatggtGTCTGGAGATCCAGATCATGAAGAGGTTGGATCATGTCAACGTTGTTGCAGCCAGAGAGGTTCCTGAGGGAATGGAGAAACTGGTGGCCACCAATGACCTGCCTCTTCTGGCAATGGAGTATTGTCAGGGAGGGGATCTGAGAAAGTATCTGAACCTCTTGGAGAACCGCTGTGGAATGAGGGAGGGCTCCGTTTTGATTCTGTTATGTGACATTTCTTCGGCTTTAACCTACCTCCATAAGAAGAGGATCATCCACAGAGATCTGAAACCGGAAAACATTGTGCTGCAACAGGGAGAGAAGAGATTGATCCACAAGATTATAGATCTTGGCTACGCTAAAGAGCTGGACCAGAGCAGCCTCTGCACCTCATTTGTGGGaacacttcagtacttgGCTCCAGAGCTGATTGAGAGACAGAAGTACACGGTCACGGTGGACTACTGGAGCTTTGGGACTTTGGTGTTTGAGTGCATCACAGGATTTCGCCCTTTCTTACCAACCTGGCAACCTGTTCCTTGGCACAATAAACTGAGGCTGAAGCAGGATGATGACATTGTTGTCTATGAGGACCTCACAGGGGAGGTTCGCTTCTCTAAACATCTGCCGCAGCCCAACAACCTCAACAGTCTGTTATTACAGAAAATGGAGAGGTGGCTGCAGCTGATGTTAAAGTGGTCTCCtcaggagagaggaaaagaccCTGCGGCTACGCCCAGCGACTGCTTCTCCCAGCTGGAGGTCATACTGCAGCTCAAGCTGGTTCATGTCCTGAACATGATGTCTGCTAAGATCCTGACATACTCGGTGTCGGACGATGAAACTGTGGCCGACCTGCAGCTGAGGATAGAAAAAGACACCAGCATccctgcagccaatcaggagctgctgctggaggccgGGTTAGCCTTGGAGCCTCATGGACTAGCTACACAGTGTGCCATAGATTACTCAGATATAGATGGGCGACGGACGGACCTGCCTCTGGTCTTCCTGTTTGATCGTTCCTCTTGCAGTTATGAACCTCAGTTTGCTCCTCGCACCCTTCCAGAAAACATCCGCTTTGTCCAAACTGACCCTAAGCACGTTCTGGCTTATAGCCCTCTGAGGAGGACTTGCGGTCAGGCATGGCACACCATCCGCTCCCTGAAGGAAGACTGGCAAAGACTGCAGCAGGGCCAGAAAGCTGCTATCATGAGCCTGCTGAGACACAACTCTTCACTGTCCAAACAGAAGAATGAGATGGTGTCCATGTACCAGAGACTGATGGCCAAGCTGGACTTCTTCACCACCAGCCTTCACATAGACATGGACAAATATCAGGAGCAAACAGCCACCGGGATCGCGTCAGAGAAACTCCTTGGTGTGTGGAGGGAGATGGAGCAGACTGCTGTCAGTTGTGGTCAGGCCAAGGTGAGTGAACTTGAGGAGGAGATGATGCAGCTGCAGCCAGGCATAGTGGATGTGCAGAGACAGCCGTGGAGGAGTGGAGAGGCCCTGGACACACTTGAAGGAAAGGCCATGGAGCTGTTCCGGAAGCTCAGAGAGAAACCCAGAGACCAGAGGTGTTCAGGGGACAGTCAGGAGGTGGTGCGCTTGGTGGTTCAGGCTGTGCAGTTCTACGAGAGAAAGCTCAGAGACTTCTACACACACCTCAGTAAAACAGCGGTGTGCCGCCAGCGTGTGATGGAGCTGCTGCCAAAGGTGGAGGGTGTGGTCCAGAGGATGGCGGAGAGTGAACAAGTCTTGATGAGTCTGCAGGAGAAACGGCAGAGGGAACTGTGGAACCTGCTCAAAGTTGCCTGTAGTAAAGTTCGCAGCCCAGTGAGTGGAAGTCCTGATGGGTTAAGAACGCCCTCCTCAGTGCCGCCTTTACTGACCCCTAGACACAGCTTACAACAGTTTGACGAGTCTCTTGTGGAGGAGAGCAGGACGTTTGAGAGTCGACTCCAGAGTTTACTGCACGACACTATCCAGGAATCAGAGAACAGTATGGAGaTGTTAAGCGAGTGGACGTGGCTGCGGGGAGGTCAGAATTTCTCCAGCGATCTCTCCTAAATTGTTTCATTCTTTGCTTACATATGGTACTCTACTGCCTCCGTGTGGATGGCATGTCAAACCACACAAGGTTTGTTAAACAATGTCTGTGGAGGAATAGCTGCTGGCACATATTTGTTTAATGAGATTAAGGAGAAGGTAATAATACCCAGTCCTGTCTGACAAGTTAAAAAATAATGCCAACCTGTAGTGCATCAACGCATATCTATCTCTGATTGGGATTAACAGGAATTTATTCAAGCATGATATTATTTACCCAtttgaaaacataaaacaaaacaatatgcaTTTTGGGAGGAAATTTGCATATCATTATGCTCTTTAAAACCATTCCACTGACATTCCACGGGACAGATTGACAACAGGTTTTAGATGCATTTGTTTCACCGTGTTGGGTGGACTTTAATCCGAAAAAGACAGATTATATTTTAAAGACTTGGGTTGTAGTCATATTCTAAAGTCATATCTGCCTTGGGCTGTGTGTCATGAACCTAAACATAAATGTGTATCCATTTTTGTGTTTCCCACTGgaccattattttttaattgtttattttattttagtaagACAATCACTATATAACATGAGTGATGTTTTTAATTGTAAAACGACCATTACATCTGTGTGCTGAATGACTGTATGTGATCGtcattttaaatgcatataCTGATAATTGTATGGAGGGTGGGCACCTATATCAAGAAACATCTGCACAATGTGGTTCAGTCCAACATCCCTGCAATGATTATAAAGTGTAAATAGTTCAGTGTGTGTTGTGAAGCCTgttatgtaacatttatactGAAACTGATGATAAAATCAGATTATTTATGATCCAAATTTTATTATCAAACATTAAATTTCTTTTTACTTGAAACTGAATCAAAAATAGTCAAATTTATGGATTGTAGAAAAACTTTGATAATGGGTACAAAAcaaaccaacttattttaataCCAGTAATTCACTttatctccttttttttaaagtaaatgtgACTGTTTCAacaattttgttgttgtacagGTACATCAAGAATGTTTTCACACGTTGTAGCTGCACGTTTAAATCTGAATTTTGGATCTTAAATGCAGTATTTTTCTGTACtgtgtgtgacttttttttatagaatgATGGCACAGgttctcttcctctttcacatgttttatgtcaaccaaactaataataataaaaat

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF18397	IKBKB_SDD	IQBAL scaffold dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041185	Domain	IKBKB, scaffold dimerization domain	Interproscan
IPR046375	Homologous_superfamily	IKBKB, scaffold dimerization domain superfamily	Interproscan
IPR051180	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969	IKB KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0008384	Molecular Function	IkappaB kinase activity	Interproscan
GO:0008385	Cellular Component	IkappaB kinase complex	Interproscan
GO:0018105	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-