Gene detail

Detailed information of Csp04G006670.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp04G006670.1	SEMAPHORIN	Chr04	17165019	17188057	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp04G006670.1

ATGCTGTCTGCCTCAGCTGTTCTCAGTTGCACTGTGTGCCTTGTGCTGTGGGGACAGGACAGAGCTGTGCTGAGTGGAGCTGAACTAGAGCAGCGTAAAGTAGAGAGAGAGGTTCTGTCTCTCCTGGAGTTGGGACTCTTATTCGAGATTTTGACCCCTGGAGCAGGAGAGGGTTTTGAAGGGACAATGGGCTCGCTCTGGGGCAGCGTTATACTGCTGTGTGGGGTGGTTCTGCTGAGGACGGAGGACAGTGGAGCCCAACAGACCAAGAACAATGTCCCCCGGCTAAAACTCTCCTATAAAGACATGTTGGAGTCGAACAACCTTGTGACGTTTGAAGGTCTGGCCAACAGTTCGGCTTACCACACCTTCCTGTTGGACGAGGAGAAAGGAAGACTTGTGGTGGGAGCCAAGGACCACATTTTCTCTTTTAACCTCCTCAATGTCAGCAGAGACTACGCACAGATCCCTTGGCCAGCTTCTCCCACCAGAAGAGATGAATGCAAGTGGGCAGGAAAAGATCTCTCGAGGGAGTGCTCAAATTTCGTCAAGGTGTTGCAGCCATTCAATCAGACCCATCTCTATGTATGTGGTACAGGAGCCTTCCACCCTGTGTGTTCCTACCTGGAGGTGGGCAAGAAGCCAGAGGACAGCGTGTTCAGATTGGAGCCTCATGTAGAAAATGGCCGAGGCAAGAGTCCCTATGATCCCAAGTTGCTCACTGCCTCCATGCTAATTGATGGGGAACTGTATGCTGGGACATCAGCTGACTTCATGGGGAGAGACTTTGCCATATTTCGCACTCTTGGCAAGCATCACCCGATCAGGACGGAGCAACACGACTCCCGCTGGCTAAATGACCCCAGGTTCGTGGCCGTTCATCCGATTCCTGAGAGTGACAACCCAGAAGATGACAAAATATACCTGTTCTTCAAAGAGAATGCTATGGATGGAGAGTATGCTGGGAAGGCCACGCATGCTCGCATCGGACAGCTCTGCAAAAATGACCTGGGAGGTCACAGGAGTTTGGTAAATAAATGGACCACCTTCCTAAAGGCTCGACTTATCTGCTCTGTGCCTGGCAGTAATGGAATAGACACACACTTTGATGAATTACAGGATGTTTTTCTCATCAGCACAAAGGATCCTAAGAGTCCAATCATCTATGCAGTATTTACTACTTCCAGCAACATCTTCAAAGGGTCGGCTGTGTGCATGTACAGCATGACAGATATCAGGAGAGTGTTCCTGGGTCCTTATGCTCATAGAGATGGACCAAACTACCAGTGGGTGCCCTTCCAGGGACGTGTTCCCTACCCACGTCCTGGAACATGCCCGAGTAAGACTTTCGGAGGATTTGAAACAACCAAGGAATTTCCTGATGAGGTTGTAACCTTTGCCCGAAGCCACCCAGCCATGTTCAATGCCGTCTACCCCATTAACAACCGACCAATCATAGTCAAAACAGATGTGGACTATCAGTTCACCCAGATAGTGGTGGATAAAGTAGAAGCAGAAGATGGGCTGTATGACGTCATGTTCATAGGCACAGATATGGGGACGATACTCAAAGTGGTATCCATCCCCAGAGGCTCATGGCATGACCTGGAGGAAGTCCTATTGGAAGAAATGACTGTTTTCAGAAAGCCAACAGCGATTACAGCGATGGAACTTTCAACAAAGCAGCAACAACTGTACCTGGGCTCAGACATTGGTGTCTCCCAGATGCCTTTGCATCGGTGTGAAGTTTATGGGAAGGCCTGTGCTGAATGCTGCCTGGCAAGGGACCCTTACTGTGCATGGGACGGCACTGAGTGCTCCAGATACTTCCCCATGGCTAAGAGGAGAACAAGGAGACAGGACATCAGGAATGGAGACCCACTCACACAATGCTCAGATCTGCAACACCATGATGAATTAAATGGGCAGTTGACTCTCTTGGATAAAACTGTTTATGGTGTGGAGAACAGCAGCACTTTCCTGGAGTGCAGTCCCAAGTCCCAGAGAGCCGTGACGTTTTGGCAGTATCAGCACTCCACTGATGACCGCAAACAAGAGATCAAATCAGACGAACATTTCATCCGCACAAACCAGGGCCTACTGATTCGCACACTTACCAAGAAGGATTCTGGGATCTATTTGTGCCAGTCGGTGGAGCACGGCTTCATGCAGACCCTCCTGAAGGTGACTTTAGAGGTCATTGACACCGACCGCCTGGAGAATCTGCTACATCATGATGAAGGGGCTGCCAGCATCCCGACCCAAGATCGTTCCTCACCTCAAGAAAGTCCCAATCAAAAGCTATGGTACAGAGACTTCCTGTCTTTGGTCAATCACCCGACTCTGAACAGTGTGGATGAGTTCTGTGAGCAGGTTTGGAAAAGGGAGAGGAAGCACAGAAGGCAGAAAGCTCACCTGGTGCAGCAAGTACAAATACAGCAACAGCAACAGCAACAGCAGCAGAAGGTTGTGGTGAACCCTCACACCCACATGCATGCTCAAGGGCTGGCAGCCAAGTGGAAACACCTGCAAGAGAGACAGAAAGGGCGCAACCGCAGGACCCATGAACTTGAGAGGGCCCCCCGTAGTGTCTGA

Transcript

Csp04G006670.1

ATGCTGTCTGCCTCAGCTGTTCTCAGTTGCACTGTGTGCCTTGTGCTGTGGGGACAGGACAGAGCTGTGCTGAGTGGAGCTGAACTAGAGCAGCGTaaagtagagagagagGTTCTGTCTCTCCTGGAGTTGGGACTCTTATTCGAGATTTTGACCCCTGGAGCAGGAGAGGGTTTTGAAGGGACAATGGGCTCGCTCTGGGGCAGCGTTATACTGCTGTGTGGGGTGGTTCTGCTGAGGACGGAGGACAGTGGAGCCCAACAGACCAAGAACAATGTCCCCCGGCTAAAACTCTCCTATAAAGacaTGTTGGAGTCGAACAACCTTGTGACGTTTGAAGGTCTGGCCAACAGTTCGGCTTACCACACCTTCCTGTTGGACGAGGAGAAAGGAAGACTTGTGGTGGGAGCCAAGGACcacattttctcttttaacCTCCTCAATGTCAGCAGAGACTACGCACAGatcCCTTGGCCAGCTTCTCCCACCAGAAGAGATGAATGCAAGTGGGCAGGAAAAGATCTCTCGAGGGAGTGCTCAAATTTCGTCAAGGTGTTGCAGCCATTCAATCAGACCCATCTCTATGTATGTGGTACAGGAGCCTTCCACCCTGTGTGTTCCTACCTGGAGGTGGGCAAGAAGCCAGAGGACAGCGTGTTCAGATTGGAGCCTCATGTAGAAAATGGCCGAGGCAAGAGTCCCTATGATCCCAAGTTGCTCACTGCCTCCATGCTAATTGATGGGGAACTGTATGCTGGGACATCAGCTGACTTCATGGGGAGAGACTTTGCCATATTTCGCACTCTTGGCAAGCATCACCCGATCAGGACGGAGCAACACGACTCCCGCTGGCTAAATGACCCCAGGTTCGTGGCCGTTCATCCGATTCCTGAGAGTGACAACCCAGAAGATGACAAAATATACCTGTTCTTCAAAGAGAATGCTATGGATGGAGAGTATGCTGGGAAGGCCACGCATGCTCGCATCGGACAGCTCTGCAAAAATGACCTGGGAGGTCACAGGAGTTTGGTAAATAAATGGACCACCTTCCTAAAGGCTCGACTTATCTGCTCTGTGCCTGGCAGTAATGGAATAGACACACACTTTGATGAATTACAGGATGTTTTTCTCATCAGCACAAAGGATCCTAAGAGTCCAATCATCTATGCAGTATTTACTACTTCCAGCAACATCTTCAAAGGGTCGGCTGTGTGCATGTACAGCATGACAGATATCAGGAGAGTGTTCCTGGGTCCTTATGCTCATAGAGATGGACCAAACTACCAGTGGGTGCCCTTCCAGGGACGTGTTCCCTACCCACGTCCTGGAACATGCCCGAGTAAGACTTTCGGAGGATTTGAAACAACCAAGGAATTTCCTGATGAGGTTGTAACCTTTGCCCGAAGCCACCCAGCCATGTTCAATGCCGTCTACCCCATTAACAACCGACCAATCATAGTCAAAACAGATGTGGACTATCAGTTCACCCAGATAGTGGTGGATAAAGTAGAAGCAGAAGATGGGCTGTATGACGTCATGTTCATAGGCACAGATATGGGGACGATACTCAAAGTGGTATCCATCCCCAGAGGCTCATGGCATGACCTGGAGGAAGTCCTATTGGAAGAAATGACTGTTTTCAGAAAGCCAACAGCGATTACAGCGATGGAACTTTCAACAAAGCAGCAACAACTGTACCTGGGCTCAGACATTGGTGTCTCCCAGATGCCTTTGCATCGGTGTGAAGTTTATGGGAAGGCCTGTGCTGAATGCTGCCTGGCAAGGGACCCTTACTGTGCATGGGACGGCACTGAGTGCTCCAGATACTTCCCCATGGCTAAGAGgagaACAAGGAGACAGGACATCAGGAATGGAGACCCACTCACACAATGCTCAGATCTGCAACACCATGATGAATTAAATGGGCAGTTGACTCTCTTGGATAAAACTGTTTATGGTGTGGAGAACAGCAGCACTTTCCTGGAGTGCAGTCCCAAGTCCCAGAGAGCCGTGACGTTTTGGCAGTATCAGCACTCCACTGATGACCGCAAACAAGAGATCAAATCAGACGAACATTTCATCCGCACAAACCAGGGCCTACTGATTCGCACACTTACCAAGAAGGATTCTGGGATCTATTTGTGCCAGTCGGTGGAGCACGGCTTCATGCAGACCCTCCTGAAGGTGACTTTAGAGGTCATTGACACCGACCGCCTGGAGAATCTGCTACATCATGATGAAGGGGCTGCCAGCATCCCGACCCAAGATCGTTCCTCACCTCAAGAAAGTCCCAATCAAAAGCTATGGTACAGAGACTTCCTGTCTTTGGTCAATCACCCGACTCTGAACAGTGTGGATGAGTTCTGTGAGCAGGTTTGGAAAAGGGAGAGGAAGCACAGAAGGCAGAAAGCTCACCTGGTGCAGCAAGTACAAatacagcaacagcaacagcaacagcagcagaagGTTGTGGTGAACCCTCACACCCACATGCATGCTCAAGGGCTGGCAGCCAAGTGGAAACACCtgcaagagagacagaaagggcGCAACCGCAGGACCCATGAACTTGAGAGGGCCCCCCGTAGTGTCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403	Sema	Sema domain	Repeat	Interproscan
PF18452	Ig_6	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627	Domain	Sema domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016201	Domain	PSI domain	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR041416	Domain	IL-1Ra-like, immunoglobulin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0008045	Biological Process	motor neuron axon guidance	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0038191	Molecular Function	neuropilin binding	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:0098978	Cellular Component	glutamatergic synapse	Interproscan
GO:2001224	Biological Process	positive regulation of neuron migration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-