Gene detail

Detailed information of Csp04G005210.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp04G005210.1	L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))	Chr04	13958306	13963098	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp04G005210.1

CGCCTTACGTAAGAACTACTGAAAGTTTGCGGAAGTTTGTTATAACAAGTTGGAAGTCCACCTTCCAGAGGGTGAAACCAAAAAGACGCGTCGTGTTTAGTTGTATTTCCAGAAATGGACCTTCGTTCAGAGCAAATACAGAGGGTCCTCTCCAAGTACAAATTCCATGATGTTGCTGTTGAGGAGTTGCAGAAAATTGATCGCATCTACCCTGGGATGATACCATCTACAGGAACATACACATTTACTGACAGCACCCAGAAAGACCTCCTGAAATTAATCGGTAACCTCCCTGTCCAGTTTAAAGGTCGCAAATACAACTTCCCCATTCAGCTATGGCTTATGGACTCATTCCCCTTCACTCCTCCCATATGCCTCCTGAGACCAACATCTAACATGGTCATCAGAGAAGGCAAACACGTTGATGCTAGTGGACGGATCTTCCTTCCAGGGCTGCACAACTGGAATTATCCTAAGTCATCTGTGGTGGGTCTTCTGAATGAAATGACTGCCAAGTTTGAGGAGGAGCCTCCATTGTCCTCAAAGACCACAGGAGAATATAAAGACCCCCATGTTCTTCTGGCTTATGTCTCTAGTCTTCAGATCAGTGATGGTGGAATGAAACCTCAAGATAAACCAATCAACAAAGTCTCAGTTATCGGCGGAGGAGATTTAGGAATGGCCTCAGTGATGAGTATTTTATCAAAGTGTAAAGTAGATAAACTGGTTTTCATTGATGTTGCTGAGAGTTCCACGAAAGGTGGAAGTACAGATCTCGAGATTTTCAGTCTGCCCAAGGTTGAGGTTTCCAGAGATTTGTCAGCCTCAGCAGGCTCCAGGGTCATCGTGGTGACAGCGAATGCATGGAGCAGCGACCAGTCATATGTAAGCGTGGTTCAGACTAATGTGGACTTGTACAGAGGAATCATCACACATCTGGCACGTCTCAGCCCACGCACAATTATGATCATTGCTTCACAACCAGTGGACATCATGACCCATGTTGCCTGGAGGCAAAGTGGCCTGCCACCGACACAGGTGATTGGAGCAGGATGTAATCTAGACTCAGAGCGACTTAGTCACATTCTAGATATTAACCTCACTACTCATCAACCAGCCTGGGTAATAGGAGAACTTTCAGACAACAAAGTTGCTGTGCTGAGCAACACCGGGCTGAACTCCAGTGTGCAGCCAGAGATCGCATCCAACTCTGCCAAACCATTGTTAGACAGAGCATTTGAGCTGATGAAGAATCGAGGTCAGCGGTCGTGGTCTGTGGGTCTGTCCATTGCCGACATCACAGACAGTGTCTTGACAGATAAGAACAAGTGCCACTCTGTCTCCACACTGGCTAAGGGCTGGGCCGGCATAGGTCCAGAGGTGTTCCTCAGTGTGCCGTGCATCATAGGATCAAGCGGTTCCACACGCTTGGCTGGAGTGTCACTTGAACAAGAGGAAGACTCCAAACTGAGGGATAGTGTCTCTTCCCTTTCTAAACTCATGAATCAGCTGAGGATATGAAGGTACATATGTACTCCCAGTTTTGGCCTTCCTGACCAGTCTGGGTGCATCAGCTGCTTAATGGCAGGACAGTTACCTTGTTAACATAAAGGACTGTGCCTGTGCTGAAGTTGAAAGCAGTTTGTTAGTTACTTACACTGGAATTTTGAGGAACATGTAGAATTTAATCAAGAGATTTGTTTCTGTGATAACATTGGATACTATGCATTAAACATGGGTTAAAAATGGATATATCAATGCATATTTACAATTTTTAACATGTTATGAGTGCACTGATATTTTTTTGAAAAGCCATTCTATGCAAAAGCATAATGATGCATGTAGTTTTGAACAGCTCAGGTTGAATTTGACAAAGACTATGTCTACCGAAGATATGTCATAATTTTAATTGCTTTTTGTACTAATCCGTTCTTTGATTCCTTTGGAGAAAATTAATGTGTTGGCAAATGAAGTATGATgaatgtatattatatatagtacAGGGTGTTGGTTTACAGTTTATTGGCCCTGTTGTCTTAGTGCTGTTTCTATGTTTAAAAACTATATGAAAAAGCTTTCTGAAATGTCTTAATATTTAAATCACTTTTGTCCTCATCATTGATAAGTTGGTGTGAAATACTTTGCACAGTCAAAACCTAAGATATGTTCATATGTACAGTAACACTACATTATTTTGTGGGTATGtaataaatatctgaaactTG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|UBC-like\|UEV
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00056	Ldh_1_N	lactate/malate dehydrogenase, NAD binding domain	Domain	Interproscan
PF02866	Ldh_1_C	lactate/malate dehydrogenase, alpha/beta C-terminal domain	Domain	Interproscan
PF05743	UEV	UEV domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001236	Domain	Lactate/malate dehydrogenase, N-terminal	Interproscan
IPR001557	Family	L-lactate/malate dehydrogenase	Interproscan
IPR008883	Domain	Ubiquitin E2 variant, N-terminal	Interproscan
IPR015955	Homologous_superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR022383	Domain	Lactate/malate dehydrogenase, C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43128	L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004459	Molecular Function	L-lactate dehydrogenase activity	Interproscan
GO:0006089	Biological Process	lactate metabolic process	Interproscan
GO:0006090	Biological Process	pyruvate metabolic process	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0019752	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-