Detailed information of Csp04G004900.1 in Chaunax sp. Gene info
Gene IDAnnotationChromosomeStartEndStrand
Csp04G004900.1VDJ RECOMBINATION ACTIVATING PROTEIN 1 RAG1Chr041261722512621496+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF12560RAG1_imp_bdRAG1 importin bindingFamilyInterproscan
PF12940RAG1Recombination-activation protein 1 (RAG1), recombinaseFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR019485DomainV(D)J recombination-activating protein 1, Zinc fingerInterproscan
IPR023336DomainRAG nonamer-binding domainInterproscan
IPR024627FamilyV(D)J recombination-activating protein 1Interproscan
IPR035714DomainRAG1 importin-bindingInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11539VDJ RECOMBINATION ACTIVATING PROTEIN 1 RAG1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0002250Biological Processadaptive immune responseInterproscan
GO:0002331Biological Processpre-B cell allelic exclusionInterproscan
GO:0004519Molecular Functionendonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0033151Biological ProcessV(D)J recombinationInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0097519Cellular ComponentDNA recombinase complexInterproscan
GO:1905347Cellular Componentendodeoxyribonuclease complexInterproscan
GO:1990238Molecular Functiondouble-stranded DNA endonuclease activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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