Gene detail

Detailed information of Csp04G004690.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp04G004690.1	RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3	Chr04	12160966	12168775	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp04G004690.1

CCGTCCTTATACCTAATGTCTTTACGTCAGACTGACGTGCCTGTCGCAGCAAGCCTACTGAGGAATATTTGTCAACCTTGGGAATATTAAAACCGTGAATGTTTTTGGAAATAATGCAGCAATCTTGAAATGAGAGTGTGAGATGGTATCACTTCGCAGAGTGAGGATAACTACCACTGCCTCATTGATGAATACGACCAGAACGGGTCTCAGGAATAGCTACTGCTGCATTCATAAACACTTCTTTAGGACTCACAACAAACCCTGAGCTTTGTTTTGGGGCCATAAACACAACAATTTCCTGTTGTACACGTGAGTTAACAATGGCTGAAGAAGGAATAATGAATATAGACCATCTCGACGGAGTTGTCAGGCTCCGAGAGGAACACGAGAAGGTCGTGAAAGACTGTGATAGTCGGACTCAGCACTGGAAGAAGGTGTCAGGTGATTATGAAGCCCTGAATGAACGCCTTCAGACTCTTCCAGACCAACTCTCCTATGACATCATGGTGCCGTTTGGCCCTTTGGCCTTCATGCCTGGGAAATTGGTGCACACCAACGAGGTCACAGCTCTGCTCGGTGACAACTGGTTTGCTAAGTGCTCTGCCAAGCAGGCTCAGAACATTGTTGAACACAGGATGAAATATGTAAAGAGGGAACTCGATGATCTGTCAAAGACCATGAAAAACTTTGAAGCCAGTGTTGGATTTGTGAAGAATTTGGAAACCATGTCAGCTAGTAAAGGGGACTATGTTGACATTAGAGAAGAGGTCGGAAACGATGGTGCTGTCAGCAAAGGAAAGCAAAGAGTAGCTCACAAACCAAATACGAAGCCCAAATCGGATGCTGTGTTGGATCTAAAAGCGGACGATGAGGAGAAAGAAGAGGCCAGGGATGGGCCGAGAAGAAAAGGCATCCTATCGGAGGTGGAGTTGTGGGCTCGATTGGATGAGCTCGAGAAACTGGAGGAGCTACAAGATGAGCAGGACAGATTATCTGATAATGCAGACATGAACGGTGAAGACACATCATCCTTATCCtcagaagaagagaaggagggagatgCTGAACCTCCTGTAAACGGAGTGAGTCTGAAGCCCAGCTGGGCCTCTGGGCCTCAAAGTAAAGCACCACCCAATGTAGacaggaaagaggaagaagacgaTGAGGAGGGAGAAGCCAGCTGTTTGCCTaccatctttttctctcacacAGTCGAACCCAAGAAGgtGAGGataaacacaggaaaaaacacCACATTGAAGTATAGTGAAAGGAAAGAGCAGAAGGAACACTcgaagaggaaaaagaaaaatggccaCAATAATGGACACTCCCATCACGAACTTCACAAAATCACAACACCAGTAGACATTTACAGGTTGTTTGTGGATGTGAAGAACGGGGAGCCCATCCCTAGGAAGTCCATCTTGAAGTCGCGCAGCCGAGAGAATAGTGTGTGCAGTGACACGAGCGAGAGCAGTGCGGCAGACTTCGAGGAGCGCCGGATGACTGGGCGCAGCTTCAGTTATGATGAGGCAACGCACAGTGACACCAGTGACGGCATTATGGAGGAGGACAGTCCCATGACTTTCCCGCTGTACCCTGCCAGCAGATTTGAGGCTTTTTCAGGTACAGTGGTAGAAAAGGACCCGATGCCCTCCTCTGTCCCCCATCTGACCATCTCTCCACCTGCTTTGCCAACCATACTGGAGAGGAAACAGGAGGAGGTGGTGCCTGAAGTCCCCCTGCCTCAGCAAGCCCCTAAAAGGGTGTCAAAGTTCAAAGCTGCCAGATTGCAGCAGACATGATTGTTAACAAGCAAAtatccatgtttttttgtttttttttaagccttGGTTTCTTTTTCCAACTGATGaacaggagaaaacacagactactctctcctctgctttctTTCATACATCTTACACTTCTAACCATACAAGGTTTCTCTCATTAAGTAGGACTGTTCAGTAAAAGTAGCGACATTAATAAATCTGCTTTGTGTGTAGCACTTCTGTTTAATACGATCCCAACACTGGTAAATACAACCTCTTCTTCTTATCCTCTCCAGTATCACACTTGACAGTTGTCCATCTTTCTGTGAGATCTGTTCACATTGATTGCTGTTTAGGTAAACCTCTAGGCTCTGCTACTTGTGATAAGTTaccttgttttgtttctttttccaaGTATTGATCATTAGACTGAATCAGGTGCCTGTTAGCTCTCATGTCACCCTCACTTGACCTGCCTAATGaatgtatattttcatttgTGATGAGATTTatgtaaagacaaaaaaaaaagaatatgaatggacaccaaaaaaataaacaatt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02996	Prefoldin	Prefoldin subunit	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004127	Family	Prefoldin alpha-like	Interproscan
IPR009053	Homologous_superfamily	Prefoldin	Interproscan
IPR052255	Family	RNA polymerase II subunit 5-mediating protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15111	RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0010923	Biological Process	negative regulation of phosphatase activity	Interproscan
GO:0019212	Molecular Function	phosphatase inhibitor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-