Gene detail

Detailed information of Csp03G004580.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp03G004580.1	PERIOD CIRCADIAN PROTEIN	Chr03	14038277	14048986	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp03G004580.1

ATGTGTGACCAAAGTGTGGCGATGCCTGGAGATGACAGCGGTCCAGATGGGGAGGAGCCTGCGTTACTACCGTCAGCCACAAGAGAAGATGGAATGGAGGAGAGGATGTTGTCAGGGCAGCAGGATGGAGGGGCACAGTCAGAGCACCTCAGAGGGGAGGAGAGGAGAGCTTCAGGTGTAGAAGTGGGGCAAGACGATGAGGAGATGACTAGTGGATCACATGACCTCTCTTCCTCTGCCAATCACAGCCCCGATAGCGCCATAGGATCCACCTCAACTTCAACTAAGAGCAGTGAGAACACACATGGTGGCAGAGGGCAAACCCACAGAGAGGTGATGATCACAGTGGCTGAGATGAAGAAGAGGCTCCCGTCAGAAAAACGCAGTCGCAGCAAAGCCAGCACTGTTGAGGCCTTACATTATGCACTCAACTGTGTCAAGCAAGTGCAAGCAAATAGTGAATACTACAAACTGCTGATGCAAAATGGCCAGGATGAGAGGAGAGACGTCAGTGCTTATACCCTGGAAGAGTTGGAGAGAGTCACCTCTGAACACACCCTTAAAAACACGGACTCCTTCGTGGTGGTCTTCTCGCTGTCGAGTGGCCGTGTGCTGTATGCGTCTGAGCAGGCTCCCAGCATCCTTTGCTGCAAGAGGAAATTCCTGGAGTCATCCAAGTTTGTGGAGCTGCTCTTCCACCAAGATGTTAATGTCTTCTACACACACACGGCTCAGCTGCACCTTCCACCCTGGAGCAACTGGCACACAGCAGGGGCTCTGTTTGACTGTGCCCAGGTCAAGTCTTTCTTCTGCAGAATCAGGGGTGGGAAGGACCGCGACGGTGAAATGCGTTACAACCCATTTCGGATAACACCCTACCTGCTGACGGTGCAGGGAAAAGGAAGCGTTGGGGAAGCGGAAGAGCCGTGTTGCCTGGCGTTGGCTGAACGCATCATTTCTGGCTACGAAGCACCTCGAATCCCGCTGGACAAGCGCATCTTCACCACCACACACTCTCCTGGCTGTGTGTTCCTGGAAGTGGATGACAGGGCTGTGCCGTTGCTAGGATATCTTCCTCAGGATCTGATTGGCTCGTCGTTGCTCACTTGCATTCACCCAGATGACCGCCCCCTCATGCTGTCGATGCACCGGAAAGTGCTGAAGTATGCGGGCCAGTCTCCATTCGAGCATTCTCCAGTACGTCTTCGCTGTCAGAATGGAGACCACATTACCCTGGACACCAGCTGGTCCAGTTTCATAAACCCGTGGAGTCGCAAGGTGGCCTTCATCATTGGACGGCATAAAGTCAGGACGAGTCCACTGAATGAGGATGTGTTTGCTGCTCAGACTATGGATGATATCCCAGTCACCCATGAGGAAATAAAAGATCTACAAGCAAAGATCTACAAGCTGTTTCTGCAGCCAGTCCATAACAATGGGTCCAGTGGTTACGGTAGTTTGGGAAGCAACGGCTCTCATGAGCACTATATCAGTGTAGCCTCTTCAAGTGACAGTAATGGCAACTTATGGGATGATTCACACCGGGAACCAATGACTCCGCAGCAGATCTGTGCCGATGTGAATAGAGTAAAGAGTTGGGGCCAGCAGGCTTATCTGGGTTCTAGCCACAAAATTGCTTTTCTTGGCAAACCTGCCACAGCACGTCTGCCCCCCACAGCCTCCAACCGTGGTGTCAGAGATCACGAAGACAGTAGGAAGCAAACACACGTTCCCTCCTATCAGCAGATCAACTGTGTGGACAACATCATCAGATATTTGGAGAGCTGTACAGGTCCGGCCCTCAAACGGAAGAGTGACTCTCACTCCCTGGCCACCTCATCTTCCTCATCCTCTGCCTCAGAAGATGACAAACCTGCTGAAACCACTGACACAGCTCAGACCAGCTCAGATGTGGTGCTGGACAGCGGGGTGTCAGTGGCCCCTACAGCAGCCGCAGTTGTTGGAGCACCTCTGACAGACATCACAATGTCCACCAAGGCCATGAGTGTAGTCTCTGTCACCAGCCAATGTTCGTACAGCAGCACGATTGTCCATGTGCCACAGCCTGAATCAGAAGCCACTGCACTGGAGGATGCCCCGATGGGCAGTGAGCCTGCTGATGCTGCTCAGACTCCTGCTCGTCCTGCCACGGGGCCCCCCACAGAAGAACGAAGGTTTATAGGTCTCACCAAGGAGGTGCTGTCAGCTCACACCCAGAAAGAGGAGCAAGAGTATGTTGATAGATTCCGCCATCACATCCTCCAGAGCCCCTACAGCTCCTATCTGCAACTAGACAACAGCTCTATGGCTCACTCAAACCACCCAGGCGACTATCCACGTGCATTGAGCGCTGGACGGTGGAACCGCTCTCAAAGAGGAAAGCGCAGACACAAGCGCCCTAAACCCCAAGGTTCCTCAGACAGCTATGTTTCTCCACCTGGCCCCAAATCCTCCTGGCCCTCCTCAGAATCCTCCCAGCCCCAGATCGGGGCACCCTACAGCCAAACATCCCTTCTCCAGGCACCATTCTTCCCTTTGATGGCGACCCAGCCTTGTCCGGAGCAACCGCCCATATCACAACAGCTGCCCGGCTCGACCCCTTTGGTGCTACAGCCTCCTGACCAAACCCAGTTCATCTACAACTTCAGTGTCATGCAGTCCTCTCAGAACCTGCCAGGCATTCCAATCCAGAATATGCAGAACTTTCAAAACTTGCAGCCCATGGCTCCAGCCCAAAGCATCAACCCATATGTCACTCCAGTTATGGTTATCTTGCCCAATTACCCAACTTTCGGTCCAGGTTACCCGTCCATTTACTCACCATCTTCTCCCTCTATCCTACCCCAAGCACCCATCAACATAGCACCCATCAACATGACAGACTTTGCCCCTGGCAGTCTCCACTTCCCTCAGCCTCTGTTCCAAGCCCAGCCTGGCTCTCACACTCAGATCCCACTGGGTCCTCTGCTTTGCTCACCCCGAGCCAGCTCCTCTGTCGGGGAAGAGGAGGAGGCAGCTGGGCCTCGGGCTTTATTCTCCAGCTCTCGTTCCAGTTCTCCACTGCAGTTGAACTTGCTGCAGGAGGAGCTGCCAAAGCCGAATGAAGGTCAGAGCAGCAGTGGCCAGAATCACGCCGAGAGCCTCCACGAACAACATGCCAATGAAGATAATAACCCCAGTGATTCTGGGAACCATGATGTTCAGTCTACATCCAGTGAGCTACTTGACCTGCTGCTGCAGGAGGATGCAAGGTCAGGGACTGGCTCCAATGCCTCAGGGTCTGGGTCAGGGGAGTCAGGTGGCTCCCTGGGATCTGGATCTGGATCTGGCTCCAATGGAACCTCCACTTCACATACTGGCAGCAGCAACAGCAGCAAATACTTTGCCAGCAATGATTCATCGGACACATCACGCAAAACCCGTAAGAGCCAGGAGGCACCGGCAGAACACCAACGCGACTTCGACACTCGGGTAGAGAACTCACCGTGGAACATCATCCAGCACACACCTGAGCATGTCATGATGACGTACCAGATCCACACCAGGGACCAGAATGAGGTGTTGGCAGAAGACAGGGAGAAGCTGCAGGTACTTCAGCCCCTCCAGCCTTGGTTCTGCCAGGAGCAGAGAGAGGAGCTGGCTGAGGTCCATCCTTGGATCCAACAGCACACTATTCCACAGGAGATTGACACACAGGGTTGTGTGAGCTGCGGTGCAGCCGCAGGGGTCGCCCATTCTCCTCCCCCTGCTGCTCCCGACAGTTCGTCCCTTCTGGATAGCCCTGAGCAGGACTCCATTGAAGCTTTGGTGGACACTTGA

Transcript

Csp03G004580.1

ATGTGTGACCAAAGTGTGGCGATGCCTGGAGATGACAGCGGTCCAGATGGGGAGGAGCCTGCGTTACTACCGTCAGCCACAAGAGAAGATGGAATGGAGGAGAGGATGTTGTCAGGGCAGCAGGATGGAGGGGCACAGTCAGAGCACctcagaggggaggagaggagagcttcAGGTGTAGAAGTGGGGCAAGACGATGAGGAGATGACTAGTGGATCACATGacctctcttcctctgccaATCACAGCCCCGATAGCGCCATAGGATCCACCTCAACTTCAACTAAGAGCAGTGAGAACACACATGGTGGCAGAGGGCAAACCCACAGAGAGGTGATGATCACAGTGGCTGAGATGAAGAAGAGGCTCCCGTCAGAAAAACGCAGTCGCAGCAAAGCCAGCACTGTTGAGGCCTTACATTATGCACTCAACTGTGTCAAGCAAGTGCAAGCAAATAGTGAATACTACAAACTGCTGATGCAAAATGGCCAGGATGAGAGGAGAGACGTCAGTGCTTATACCCTGGAAGAGTTGGAGAGAGTCACCTCTGAACACACCCTTAAAAACACGGACTCCTTCGTGGTGGTCTTCTCGCTGTCGAGTGGCCGTGTGCTGTATGCGTCTGAGCAGGCTCCCAGCATCCTTTGCTGCAAGAGGAAATTCCTGGAGTCATCCAAGTTTGTGGAGCTGCTCTTCCACCAAGATGTTAATGTCTTCTACACACACACGGCTCAGCTGCACCTTCCACCCTGGAGCAACTGGCACACAGCAGGGGCTCTGTTTGACTGTGCCCAGGTCAAGTCTTTCTTCTGCAGAATCAGGGGTGGGAAGGACCGCGACGGTGAAATGCGTTACAACCCATTTCGGATAACACCCTACCTGCTGACGGTGCAGGGAAAAGGAAGCGTTGGGGAAGCGGAAGAGCCGTGTTGCCTGGCGTTGGCTGAACGCATCATTTCTGGCTACGAAGCACCTCGAATCCCGCTGGACAAGCGCATCTTCACCACCACACACTCTCCTGGCTGTGTGTTCCTGGAAGTGGATGACAGGGCTGTGCCGTTGCTAGGATATCTTCCTCAGGATCTGATTGGCTCGTCGTTGCTCACTTGCATTCACCCAGATGACCGCCCCCTCATGCTGTCGATGCACCGGAAAGTGCTGAAGTATGCGGGCCAGTCTCCATTCGAGCATTCTCCAGTACGTCTTCGCTGTCAGAATGGAGACCACATTACCCTGGACACCAGCTGGTCCAGTTTCATAAACCCGTGGAGTCGCAAGGTGGCCTTCATCATTGGACGGCATAAAGTCAGGACGAGTCCACTGAATGAGGATGTGTTTGCTGCTCAGACTATGGATGATATCCCAGTCACCCATGAGGAAATAAAAGATCTACAAGCAAAGATCTACAAGCTGTTTCTGCAGCCAGTCCATAACAATGGGTCCAGTGGTTACGGTAGTTTGGGAAGCAACGGCTCTCATGAGCACTATATCAGTGTAGCCTCTTCAAGTGACAGTAATGGCAACTTATGGGATGATTCACACCGGGAACCAATGACTCCGCAGCAGATCTGTGCCGATGTGAATAGAGTAAAGAGTTGGGGCCAGCAGGCTTATCTGGGTTCTAGCCACAAAATTGCTTTTCTTGGCAAACCTGCCACAGCACGTCTGCCCCCCACAGCCTCCAACCGTGGTGTCAGAGATCACGAAGACAGTAGGAAGCAAACACACGTTCCCTCCTATCAGCAGATCAACTGTGTGGACAACATCATCAGATATTTGGAGAGCTGTACAGGTCCGGCCCTCAAACGGAAGAGTGACTCTCACTCCCTGGCcacctcatcttcctcatcctctgcCTCAGAAGATGAcaaacctgctgaaaccactGACACAGCTCAGACCAGCTCAGATGTGGTGCTGGACAGCGGGGTGTCAGTGGCCCCTACAGCAGCCGCAGTTGTTGGAGCACCTCTGACAGACATCACAATGTCCACCAAGGCCATGAGTGTAGTCTCTGTCACCAGCCAATGTTCGTACAGCAGCACGATTGTCCATGTGCCACAGCCTGAATCAGAAGCCACTGCACTGGAGGATGCCCCGATGGGCAGTGAGCCTGCTGATGCTGCTCAGACTCCTGCTCGTCCTGCCACGGGGCCCCCCACAGAAGAACGAAGGTTTATAGGTCTCACCAAGGAGGTGCTGTCAGCTCACACCCAGAAAGAGGAGCAAGAGTATGTTGATAGATTccgccatcacatcctccagAGCCCCTACAGCTCCTATCTGCAACTAGACAACAGCTCTATGGCTCACTCAAACCACCCAGGCGACTATCCACGTGCATTGAGCGCTGGACGGTGGAACCGCTCTCAAAGAGGAAAGCGCAGACACAAGCGCCCTAAACCCCAAGGTTCCTCAGACAGCTATGTTTCTCCACCTGGCCCCAAATCCTCCTGGCCCTCCTCAGAATCCTCCCAGCCCCAGATCGGGGCACCCTACAGCCAAACATCCCTTCTCCAGGCACCATTCTTCCCTTTGATGGCGACCCAGCCTTGTCCGGAGCAACCGCCCATATCACAACAGCTGCCCGGCTCGACCCCTTTGGTGCTACAGCCTCCTGACCAAACCCAGTTCATCTACAACTTCAGTGTCATGCAGTCCTCTCAGAACCTGCCAGGCATTCCAATCCAGAATATGCAGAACTTTCAAAACTTGCAGCCCATGGCTCCAGCCCAAAGCATCAACCCATATGTCACTCCAGTTATGGTTATCTTGCCCAATTACCCAACTTTCGGTCCAGGTTACCCGTCCATTTACTCACCATCTTCTCCCTCTATCCTACCCCAAGCACCCATCAACATAGCACCCATCAACATGACAGACTTTGCCCCTGGCAGTCTCCACTTCCCTCAGCCTCTGTTCCAAGCCCAGCCTGGCTCTCACACTCAGATCCCACTGGGTCCTCTGCTTTGCTCACCCCGAGCCAGCTCCTCTGtcggggaagaggaggaggcagctGGGCCTCGGGCTTTATTCTCCAGCTCTCGTTCCAGTTCTCCACTGCAGTTGAACTTGCTGCAGGAGGAGCTGCCAAAGCCGAATGAAGGTCAGAGCAGCAGTGGCCAGAATCACGCCGAGAGCCTCCACGAACAACATGCCAATGAAGATAATAACCCCAGTGATTCTGGGAACCATGATGTTCAGTCTACATCCAGTGAGCTACTTgacctgctgctgcaggaggatGCAAGGTCAGGGACTGGCTCCAATGCCTCAGGGTCTGGGTCAGGGGAGTCAGGTGGCTCCctgggatctggatctggatctggctCCAATGGAACCTCCACTTCACATACTGgcagcagcaacagcagcaaataCTTTGCCAGCAATGATTCATCGGACACATCACGCAAAACCCGTAAGAGCCAGGAGGCACCGGCAGAACACCAACGCGACTTCGACACTCGGGTAGAGAACTCACCGTGGAACATCATCCAGCACACACCTGAGCATGTCATGATGACGTACCAGATCCACACCAGGGACCAGAATGAGGTGTTGGCAGAAGACAGGGAGAAGCTGCAGGTACTTCAGCCCCTCCAGCCTTGGTTCTGccaggagcagagagaggagctggCTGAGGTCCATCCTTGGATCCAACAGCACACTATTCCACAGGAGATTGACACACAGGGTTGTGTGAGCTGCGGTGCAGCCGCAGGGGTCGCCCATTCTCCTCCCCCTGCTGCTCCCGACAGTTCGTCCCTTCTGGATAGCCCTGAGCAGGACTCCATTGAAGCTTTGGTGGACACTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08447	PAS_3	PAS fold	Domain	Interproscan
PF12114	Period_C	Period protein 2/3C-terminal region	Family	Interproscan
PF21353	Per3-like_PAS-A	Period circadian protein homolog 3-like, PAS-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR022728	Domain	Period circadian-like, C-terminal	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR048814	Domain	Period circadian protein homolog 1-3, PAS-A domain	Interproscan
IPR050760	Family	Period circadian regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11269	PERIOD CIRCADIAN PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0001222	Molecular Function	transcription corepressor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0032922	Biological Process	circadian regulation of gene expression	Interproscan
GO:0043153	Biological Process	entrainment of circadian clock by photoperiod	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-