Gene detail

Detailed information of Csp03G003860.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp03G003860.1	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Chr03	12194169	12227711	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp03G003860.1

ATGAGCGGTACCAAAGCCCGCAGCGACGCGCCTGTTGCTGAAAATGTCTCCGGCGGCGGGCACAGCACCGCGGCTGCTCCGCGTGACCGCAAGCCTGGTGGAGGAGTTCTGAAGAGGCTGAAGTCCCGGAGGAGCCAGGTGGACAGCAGGCCCGTCACGGAGGAAGACCTGCGTACACAAAGTGGACACATCACACCGGAGGATGTGTTAGGACTGCGTGTGGCTACGCgagGGTACCTCTGTAAACCTGAGGAAAATATTTATAACATTGACTTCATACGCTTTAAGATCAGAGACCTGGAGACCAGCACTGTCCTGTTTGAGATTGCCAAACCCCCCCATACAGAGGACgatgaagagaacagagaggCAGACGCCAGTGCAGGTCGATTTGTACGCTACCAGTTCACCCCAGCCTTCTTGAGACTGAGGACTGTGGGAGCCACGGTGGAATTCACAGTTGGAAACCGGCCTCTGAACAACTTCCGCATGATCGAGAGGCACTACTTCCGCGATCACCTGCTGAAGAGCTTTGACTTTGACTTCGGCTTCTGTATTCCGAACAGCCGAAACACCTGTGAGCACATCTATGAGTTCCCTCAGCTTTCCGAGAGCATGGTCCGTCAGATGGTGGAGTGTCCTTATGAGACCCGGTCAGACAGCTTCTATTTCGTCGAGAACAGACTGGTCATGCACAACAAGGCAGACTATGCTTACAATGGAGGGCACTCTCTTTCAAACTGCCTCGAGGGTGGCGGGAGCAGGTCCCAGGCCCTGGCAGTGCGGGAATATACCAGTGGAGAGCAGAATGGATACGGAAGGGAGCCAGAGCAGCCTGTCCTCCAGCACGGACAACTCTCCCCACGACCCCTGGGGATTATGACGGCCCGACTGGCCGATTGCAAAATGTTCATCGGGGGTCTGAGCTGGCAGACAACACAAGAGGGCTTGAAGGAGTACTTCTGTAAATTCGGCGAGGTGAAGGAGTGTATGGTGATGCGGGATCCCGTTACCAAGCGGTCGAGgGGCTTTGGGTTTGTAACATACGCCGAACAAGCCGGCGTGGAAAAGGTTTTGGCGCAAAACAGACACGAGTTGGATTCTAAAACGATCGACCCAAAGGTGGCGTTTCCCCGCCGGGCTCAGCCTAAGCTGGTGACTAGGACAAAGAAGATCTTTGTCGGAGGACTGTCAGTCAATACCACCATTGAAGATGTGAAGCATTACTTCGACCAGTTTGGAAAGGTCGATGATGCCATGCTTATGTTTGACAAAACAACCAATAGACACAGAGGCTTCGGCTTTGTTACCTTTGAGAATGAAGATGTGGTGGAGAAAGTGTGTGAGATCCACTTCCACGAGATCAACAACAAAATGGTTGAGTGTAAGAAAGCCCAACCCAAGGAGGTGATGACGCCAACAGGCTCAGCCAGAGGTCGCTCCAGAGTAATGCCCTACGGGATGGACGCCTTCATGCTGGGAATCGGCATGCTGGGCTACCCAGGCTTCCAGACTACTACCTACACCAGCCGCAGTTACTCTGGGATTGCTCCTGGTTACACTTATCAGTTCCCAGAATTCCATTTAGAGAGGACCCCCCTCCTGACATCATCCCACCCCGCTGAGCTTGCAGCCATTCCCTTAACTGCATATGGACCAATGGCAGCagccgcagcagcagcagtagttagaggcTCCACCCCTTCACGCACAGCTGGTTTCCTGGGAACTAGCAGCCCTGGACCAATGGCTGACTTGTatgctgcagccaatcaggACTCAGGAGTCAGCAGCTACATTAGCGCCGCTAGCCCCTCTCCCAGCACAGGGTTCGGCCATGGACTAGGGGGTCCTCTGATTGCTACTGCGTTCACTAATGGCTACCACTGAGAAGTCTCAGGTCACTTATGATGGGAGGGATTCTCCTCTGCTGATGAGCCAATCAAAATGCTGGTTGCCCACTGATGGCACAACTTGATTGGCCGACCACAGGCTCTAACAGGCTCTCCTGGCTCCCTGTGGCTCCACCCACCGACTGAATATCTTTTTAAATCCTGAACTCTGTTTTGTTGTACTAATCTCACTTCAACATAAGgtccccatctctctcctcttttgcCCTCATGTAGTCTAATAACTAGGTCCCCGCCTCCGTTATCCATTATTTTCTTTTGAagctgagaaaagaaaaaaaaaaatctctgaggAAACATTGTCGTCTTTGACAAAGACATGGAGGACTATTttgagttttttaaaaatattattttattctaaagTGATATGTCGTTTCATCATGACATCCTTCAAAACTGTTACAGATGTGAACAGAGACAGGCAAAGCTGCGCGAGATGGGTCTTTGTCTGAAAACCGTTTTTAACAAAGGAAGAACAAACCCGACAGTCCTTTTTTTAACTCGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF05351	GMP_PDE_delta	GMP-PDE, delta subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR008015	Domain	GMP phosphodiesterase, delta subunit	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR034126	Domain	RNA-binding protein Musashi homologue, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR037036	Homologous_superfamily	GMP phosphodiesterase, delta subunit superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0007417	Biological Process	central nervous system development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-