Gene detail

Detailed information of Csp03G000960.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp03G000960.1	1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FAMILY MEMBER	Chr03	4441745	4457467	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp03G000960.1

GTCTGACCTGGCCCATATCTGCCTTAAACTTATGAGTCAGGTGCGTTAGAGGGTGTGTGAACGCTAACTCATTTTCTGCTTCAATTTTATCAACCTGTCGTAGAAACATGCTGCGCGTGAGGGCGGCTCTATACCAGTCTTGGAGAGGGTTCAAAACGTTCCcttgtgcagctgtgcaggtgaAAAATGAACCAGTGTTGGGCTTCAAAGAAGGGAGTCCAGAAAGAAAAGAGCTGCTGAAGgcCTTGGACAGTGTGAAAGGATGCACAGAGGAGATCCCATGTGTGGTTGGAGATGAGCATGTATGGACTAAAGACATCAGATATCAGTTATCTCCGTTCAATCACTCGCATAAGGTGGCAAAGTTCTGCTATGCTGACAAGGAGCTTATCAACAAAGCCATCCTGGCATCTGTGGCAGCGAGAAGAGATTGGGACCTGAAGCCTGTCCAGGACAGAGCGCAGATTCTCTTCAAGGCAGCCGATGCCATCAGTGGACCTAAGAGAGCAGAAATCCTGGCCAAGACTATGATTGGGCAGGGTAAAACTGTGGTCCAGGCAGAGATCGATGCTGCTGCTGAGCTGATCGACTTTTTCAGATTTAATGCCAAACATGCCTCTGAACTGGAAACACAGCAGCCATTAAATTCTGAGGGAAGCACAAACACCATGCTCTATCGTGGACTGGAAGGTTTTGTTGCAGCTGTGGCCccttttaatttcacagctatTGGTGGAAACCTGGCAGGTACCCCAGCTTTGATGGGTAATGTCGTACTGTGGAAGCCGAGCGACGCCGCCATGTCTGCCAGCTACGCCGTCTACAGAGTCCTGAGGGAGTGCGGTCTGCCCCCAAACATCATCCAGTTCCTGCCAGCTGATGGTCCAGTGTTTGGAGACACCATTACCTCCTCAGAGCACCTGGCAGGCATCAACTTCACCGGCAGCGTCCCGACATTCAAGCGTCTTTGGAAGCAGGTCGCCCAGAACCTGGACACCTACAAGACCTTCCCTCGACTGGCAGGAGAGTGTGGAGGAAAGAATTTCCACTTTGTCCACAAGTCAGCGGACATTGAGAGCGTGGTGAAGGGTACGATTCGCTCTGCGTTTGAGTACGGAGGTCAGAAGTGTTCGGCCTGCTCCAGGATATACGTGCCAGACAGCAAGTGGCCGCAGATCAAACAGGGGCTGCTGGATATTCACCAAAACATCAAAGTGGGAGACccgGTGGAAGACTTGAGCACCTTTTTCTCAGCTGTGATCGATGACAAGTCATTTGCCAGAATAAAGAAGTGGCTCGACCATGCCAAGTCCTCGCCTAATCTGAAAGTCATCGCTGGAGGAAACTGTGACGACAAGAAGGGTTACTTTGTGGAGCCGACCATCATTGAGACCACAGACCCACAGGACGCCATCATGAACGAGGAAATCTTTGGGCCAGTTCTGACGGTTTATGTTTATCCTGAGAACAACTACAAAGAGGTGCTGCAGCTGATAGACAACACATCGCCGTACGCCCTGACAGGAGCCGTGTTCGCTCATGACAAGAATGTGATCGAAGAGGCAGCCAAAGCCTTGAGAAACTCTGCAGGGAACTACTATGTCAACGATAAATCCACCGGCTCTGTTGTTGCTCAGCAACCGTTTGGTGGTGCCAGAGCTTCAGGAACCAACGACAAACCGGGAGGTCCACACTATGTCCTGAGGTGGACGTCGCCACAGGTGGTGAAACAGACCTACGTCCCGCTCAGAGACTGGAGGTACCCTTACATGGGCTGAGGGAGACTCCACTGCTGTTGGTCCAATCAGATCCGTCCCTCCGTCAGCTGATTCTGTGATCACTAACAACGTACTCATGTGTACATACAAACTCCTGTGAAATGAAAcggtctgtctgtgtttacactgaacCTGGACATGAATGTATTTGACTGAATGAGTGGAGAGAAAGTCTTCAGCCATTCACCATCATTACACTGTATGTGACAGTTTGGTACTGGTCCATTCATCCCACCAAGTCCAAGGAGATCCCTCAAAGTTGTTAGCAATAAAAGTATTGAGGTTCAAATTTAAACAATTTTATCATGAAAATTCAACTTGGAGCTCAAACAGTAGTAAATTTGTCAAAATAATCAGCAACAATTGTGATAATTGGTTATAAATTTGAGTTACTTTTTTAAATCCCAAGTAGAGAACTGCACTGGTCTGACCTACTGAATTCTGAATATTCTCCTTTATTGTTCTTCACTGATGATAAAGTGAACATATTGGAGTCAGTGGGACAAAAGGagacatttgaagacatcacctTTAACTTGATACACTTATTGATCTGTGATtaacatttttcactattttttaaTAGCCAGATGACTTAACAGATGACttatattttcaaaatgtgCCTGCCTTAGTAACTCTGTGAATTTAGATGAAATTTTTGacaataaatattaaattattacagta

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005931	Family	Delta-1-pyrroline-5-carboxylate dehydrogenase	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016160	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR029510	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14516	1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003842	Molecular Function	1-pyrroline-5-carboxylate dehydrogenase activity	Interproscan
GO:0010133	Biological Process	proline catabolic process to glutamate	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-