Gene detail

Detailed information of Csp03G000120.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp03G000120.1	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	Chr03	1401306	1414783	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp03G000120.1

TTCAATAACACACTGCATTTAATGAGGAAACATCCATCAGGATTATGtgactgtggctcaggacagGAAACAGTTGGTCATGATATCTCTCAGAGGTATAGAAGAGAGAAAGTTAAGAATTTCTTTAGCATTGAAGAAGGAAACTATAACGCCTTATTTGGGTTCTTAAAAGaaattgaagaagaagaagaagatctgtGGTGTCCTGTCTGAAGGTGGAACTGAGGAGGCTATGAATTTCAGCCGGACATGAGTTCGGTGACACAAGAGCGTCCGGCAGCAAAACAAACCCGACCAGAAACGAAAGGGATAAAAATATAGAGCATGCTAACCGTCAGCAGCGTCTCTCACGAGCCTCTCAGAAACATTCACAAAGACCGGATCCAGCTGGAAACTGTCGTTCCAAAAACCCGACCTGAGCAGACCCAGTCCCGACAACATGCAGGCGGAGTTTAGGCCTCCCCAGAGACGCACCCGCGTACATGAGCAGTACGAGGCTCCGCTGCCGGTGAACCGCAGCCCGGACGACAGGAGCCAGTTCCGGGCGCAGCTCATCAACCAACACGTGCTGGTCTGTAATCCGGACCACATCCAGAAGATCCACCACCAGGGTTATTTTGGTAAAGGCATTCTTTCCAGAGCCAGACCTGACCACTGCATCTCTGACCAATGGGAGCAACATGAAGGTTTGTTTCTACCCGTCATCTCACAGTCCAGGTATGATGAGCTGCTCAGGTGGGCAGGTGCATCTCTCTCTGCTCAAGGATGGGATGAACAGGCTGTCAATCAATCACTGCTCACACTGTCTCAGCCAGTCGAGATGGAGGATGTGAGGAgggaggtgggagaggaggagccaGGACCAAAGGCTGCAGTCTGTCTGCCAGGGTTAGAGGTGGATCCAGAGGCCAGGAGAAGCTGCAGGTTTGATGTGAACCCTCACCACAACCCTGATCCCAGCTCAGACCTGAACCTTCACCACAACCCTGATCCCAGCTCAGACCTGAACCCTCACCACAACCCTGATCCCAGCTCAGACCTGAACCCTCACCACAACCCTGATCCCAGCTCAGATCCTAGTCCAGGTACTGGTTTTGTCCTGGTGGTCTCTAACAGTGAGGTATGTGGGCGTGTCATGGTGGTCCGGCGGACTCCGGTCTCTCTCACTGAGTACCTGCAGCTCAGTCTGGAGGAGGCCTTTTTCCTGGTCTACAGTCtgggctgtctgtctgtctgcctgcaaGAGGAGCCCCTGTCAATCATCCAGCTGTGGAAGAAGTTACGGTCGCTGCGACCTGACTTTGTCAGCTCATTTGCAGCCTATCAGCACTATCGAAGCAGGGGGTGGATCCCTAAAGGAGGGGGTGGGGCCAAGTATGGTGTTGACTTCAtgttgtacAGGAAAGGTCCACCTTTCTATCACgccagTTATTCGGTGGTAGTGGAGCGTGTTGATGATGCGTTCAGAGGCTCTGGGCTGCGTCAATTTTCGTGGCGGTCTCTGGCAGCTCTCAGCAGGATCACTGCCAATGTCTCCAAGGAGTTGATGCTGTGTTACATCATCTATCCAGCCGACCTATCAGAGGCAGACCTggactcacctgtctgtctgagcaGACTGAAGGTTCAGGAAGTGATCATCAGCAGGTGGGTTTCCTCCAGAGAACGAGCAGAGCAGGACATCATCTGATTGGCCGACAGGAGGCTTCAGAAATGGATGATgtcacagagagacagatgaacaGAAGCAAGAAGACAATATCGACATCATGAAAAGAGATTGTGTATTTTTAGAAGTATAAAATATGAAGTCTCTGCTTGACTTTTCGGGTGAAATCTTTTAGTAAATACAGTTGTTGAGTTTGTGAGCAGCTGTCAGTCACTTTGATTCATTTCAATCATACAGAAGCTCTCAGACCTCACGGTGGAGGTGTTGGTTCACCTTGTCTTGTCTGCCTGTTCTTCCCACATGGATAGAATTCACTCAAGTTTCATACAGGCTTTGATCCTAACGGTGTCCATCTCAtaactggtttcttcaatttccttaatttgacattttaaggcacatttgaacttcgCTGATTTTCATGCCATTCTGCTGTTATTTTGCTATGATATAaattatggtctgtccacatgtTCCAGTAGCCTGTAACACATTTGGACACAAATGTTCTGGTTATTTATGtaaaggaaaattaaaaaatggtTATTTCACAATATAACGCAGTCagactgtcaaaataaaagtcctttGCTTCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01974	tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	Domain	Interproscan
PF02778	tRNA_int_endo_N	tRNA intron endonuclease, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006676	Family	tRNA-splicing endonuclease	Interproscan
IPR006677	Domain	tRNA intron endonuclease, catalytic domain-like	Interproscan
IPR006678	Domain	tRNA intron endonuclease, N-terminal	Interproscan
IPR011856	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR016589	Family	tRNA-splicing endonuclease, SEN2 subunit	Interproscan
IPR036167	Homologous_superfamily	tRNA intron endonuclease, catalytic domain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21227	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000213	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0000214	Cellular Component	tRNA-intron endonuclease complex	Interproscan
GO:0000379	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006388	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-