Gene detail

Detailed information of Csp02G010310.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp02G010310.1	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Chr02	34489539	34544781	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp02G010310.1

ATGATGTTTCGTGATCAGGTGGGGGTCCTAGCCAGCTGGTTCAAGGGATGGAATGAATGCGAGCAGACGGTGGCTCTGCTGTCACTGCTAAAGAGGGTGAGCCGGACCCAGGCCCGCTTCCTGCAGCTCTGTCTGGAGCACTCCCTCGCTGAGTGCACCGAACTGCAGGTTCTGGAGGGAGAGGCCAACAACCCAGGGGTGATCAGCCAGTGGCAAAGTGAGTCTAAGGAGCGAATCATCTCCCTTGTTCTCACCCACCTCCCACTGCTCAAACCTGGCAACATTGAAGCCAAAGGTGAGTACATGCGCCTGCTGCCCCGCATTCTGGCCCACACCATCGAGCACGGCCATCACCTGGAGGAGTCTCGCCAGCTCTTGTCCTACGCCCTTATCCACCCCGCCACCTCCCTGGAAGACCGTGCTGCCCTGGCACTCTGGCTCAACCACTTGGAGGAGAGGGCAGCTGCCCGGGGAGACTCACTGGAAAGGCCTCCTCCTGCAGGGCCACAACACCACCACCACCACCACCACCAGTCCACGCCTCCATCCACCCTCAACTCATCAGGATCCTCCTCCTCCACTAACACCTCATCATCAGGCAATCTCTACTCCTTGCATCACCACCAGCGCTACGGCTCGGACGACCGCCTCAACGGGTGGCAGAGCTCCAGGGATTCAGGACTGGGAGGAGGCTGGCATCAGCAACAACAGAGCTGTGAGAATGGCCACCTCCTTCTCTACCCATCATCCTCTGTGCCGGCCACCATCAACACGGTTGGAACTGGTGGAAGCAGTAACACTATCCTGACGAGTGGAGGTGGCAGCCAGCAGCACAGTCCCCTGAAGCGCTCCGTGTCCCTCACGCCTCCCATGAGCGGCCCCAGCAACCAACCCCTGGGCCACGTCTGGCTTTCCCAGGAGGACCTCCGGAGCACCAGAGGCCCAGCCCCAGACCACGCACCTCTGTCACCCCAGAGCAGCATTGCCTCCTCGGGCAGTGGAGGCAGCGAGCACCTGGAGGAGGCTGGCTTTGGAGGAGGTTCAGGTCTGCATCGGAGCTCGTTCCATGAGGAGGGCAGTGGTATGAGGGATGTTCCTGCGTGGCTGAAGAGTCTCCGTCTCCATAAATACGCTTCTCTCTTCTCCACAATGACCTACGATGAGATGTTGTCACTGACTGAAGAGCAACTAGAAGCACAGAAAGTCACCAAAGGAGCAAGACACAAGATAGTCATCAGCATTCTGAAGCTCAGAGAGAGGCAGAACCTCCTTCGGAGCCTGGAAAAGGACGTGTTGGAGGGCAGTAATCTTCGTGCTCCTCTGCAGGAGCTCCACCAGATCATCATGACTCCTATCAAGGCTTTCAGCGGCGGCGAGGAGGTCTCCCTGCACCGACCCCTGCTAAGCCCTGAAGGCAAGAGCGCAGCTCCTGGCTCCCACCTGAGTGGGGGTGGTGGAGGGGAGGCTGAGTCCAGTACAAGCGTCATCGCTGAGGGGGATCTACCCAGCCAGTTCACTCGCGTCATGGGCAAAGTTTGCACCCAGCTGCTGGTGTCCAGGTCAGACGAGGACAACATCAGCTCCTACCTGCAGCTCATTGACAAGTGCCTTATCCATGAGTCCTTCACTGAGACGCAGAAGAAGAGGCTGTTGTCATGGAAACAACAGGTCCAGAGGCTCTTCCGGTCCATTCCACGGAAAGCCCTCCTGGACATAGCAGGGTACCGACCACAGAGGAGCCGTTTCGGCCAGTCGAACTCTCTCCCCACCGCTGGCTGTGTTGGGAGCAGTGTGTCGGCCAGGAGGAGCCTTCGCCAGTTCCAGATGCCCTCCAGGAGTTTGCCAGGTGCCAGGCTGGGCCTGCTGGGCAGCGGGGGGCTGCTGGGACCCACACCCCGCAGCTCCAGCAGCACACCCACCGGCCCGAAGCAGGGGAGACAGGGTCTGTGGTTTGCCAACCCCGGAGGAAGTAACAGCATGCCCAGCCGGACCCACAGCTCCGTGCAGAGGACCAGGTCCCTGCCTGTTCACACCACGCCACAGACCATGGTCATGTTCCAACAAGCCGATCTTCAGTTGCCAGTGACGGAGCCAGACATCAACAATCGCCTCGAGTCTCTGTGTCTGAGTATGACTGAGCATGCCTTGGGAGATGGTGCTGACAGAACATCAACCATATGA

Transcript

Csp02G010310.1

ATGATGTTTCGTGATCAGGTGGGGGTCCTAGCCAGCTGGTTCAAGGGATGGAATGAATGCGAGCAGACGGTGGCTCTGCTGTCACTGCTAAAGAGGGTGAGCCGGACCCAGGCCCGCTTCCTGCAGCTCTGTCTGGAGCACTCCCTCGCTGAGTGCACCGAACTGCAGGTTCTGGAGGGAGAGGCCAACAACCCAGGGGTGATCAGCCAGTGGCAAAGTGAGTCTAAGGAGCGAATCATCTCCCTTGTTCTCACCCACCTCCCACTGCTCAAACCTGGCAACATTGAAGCCAAAGGTGAGTACATGCGCCTGCTGCCCCGCATTCTGGCCCACACCATCGAGCACGGCCATCACCTGGAGGAGTCTCGCCAGCTCTTGTCCTACGCCCTTATCCACCCCGCCACCTCCCTGGAAGACCGTGCTGCCCTGGCACTCTGGCTCAACCACTTGGAGGAGAGGGCAGCTGCCCGGGGAGACTCACTGGAAAGGCCTCCTCCTGCAGGGccacaacaccaccaccaccaccaccaccagtccACGCCTCCATCCACCCTCAACTCATCaggatcctcctcctccactaacACCTCATCATCAGGCAATCTCTACTCCTTGCATCACCACCAGCGCTACGGCTCGGACGACCGCCTCAACGGGTGGCAGAGCTCCAGGGATTCAGGACTGGGAGGAGGCTGGCATCAGCAACAACAGAGCTGTGAGAATGGCCACCTCCTTCTCTACCCATCATCCTCTGTGCCGGCCACCATCAACACGGTTGGAACTGGTGGAAGCAGTAACACTATCCTGACGAGTGGAGGTGGCAGCCAGCAGCACAGTCCCCTGAAGCGCTCCGTGTCCCTCACGCCTCCCATGAGCGGCCCCAGCAACCAACCCCTGGGCCACGTCTGGCTTTCCCAGGAGGACCTCCGGAGCACCAGAGGCCCAGCCCCAGACCACGCACCTCTGTCACCCCAGAGCAGCATTGCCTCCTCGGGCAGTGGAGGCAGCGAGCACCTGGAGGAGGCTGGCTTTGGAGGAGGTTCAGGTCTGCATCGGAGCTCGTTCCATGAGGAGGGCAGTGGTATGAGGGATGTTCCTGCGTGGCTGAAGAGTCTCCGTCTCCATAAATACGCTTCTCTCTTCTCCACAATGACCTACGATGAGATGTTGTCACTGACTGAAGAGCAACTAGAAGCACAgAAAGTCACCAAAGGAGCAAGACACAAGATAGTCATCAGCATTCTGAAGCTCAGAGAGAGGCAGAACCTCCTTCGGAGCCTGGAAAAGGACGTGTTGGAGGGCAGTAATCTTCGTGCTCCTCTGCAGGAGCTCCACCAGATCATCATGACTCCTATCAAGGCTTTCAGCGGCGGCGAGGAGGTCTCCCTGCACCGACCCCTGCTAAGCCCTGAAGGCAAGAGCGCAGCTCCTGGCTCCCACCTGAGTGGGGGTGGTGGAGGGGAGGCTGAGTCCAGTACAAGCGTCATCGCTGAGGGGGATCTACCCAGCCAGTTCACTCGCGTCATGGGCAAAGTTTGCACCCAGCTGCTGGTGTCCAGGTCAGACGAGGACAACATCAGCTCCTACCTGCAGCTCATTGACAAGTGCCTTATCCATGAGTCCTTCACTGAGACGCAGAAGAAGAGgctgttgtcatggaaacaacAGGTCCAGAGGCTCTTCCGGTCCATTCCACGGAAAGCCCTCCTGGACATAGCAGGGTACCGACCACAGAGGAGCCGTTTCGGCCAGTCGAACTCTCTCCCCACCGCTGGCTGTGTTGGGAGCAGTGTGTCGGCCAGGAGGAGCCTTCGCCAGTTCCAGATGCCCTCCAGGAGTTTGCCAGGTGCCAGGCTGGGCCTGCTGGGCAGCGGGGGGCTGCTGGGACCCACACCCCGCAGCTCCAGCAGCACACCCACCGGCCCGAAGCAGGGGAGACAGGGTCTGTGGTTTGCCAACCCCGGAGGAAGTAACAGCATGCCCAGCCGGACCCACAGCTCCGTGCAGAGGACCAGGTCCCTGCCTGTTCACACCACGCCACAGACCATGGTCATGTTCCAACAAGCCGATCTTCAGTTGCCAGTGACGGAGCCAGACATCAACAATCGCCTCGAGTCTCTGTGTCTGAGTATGACTGAGCATGCCTTGGGAGATGGTGCTGACAGAACATCAACCATATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR037093	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan
IPR037634	Domain	Protein Smaug, SAM domain	Interproscan
IPR050897	Family	SMAUG/VTS1 RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043488	Biological Process	regulation of mRNA stability	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-