Gene detail

Detailed information of Csp01G005340.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp01G005340.1	OS02G0815200 PROTEIN	Chr01	18686442	18691443	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp01G005340.1

ATGACACCAATGTGTGATTCCAGACTCCAGGAGCAGGTTTTCATGGTCAAGAAGTCACAGTATGAGGCAGCATCCTCTGGTGCAGCAGCAGCAGCAGCAGCCGCCCTCCCCCTCTGCAGCCTCTCCAGCAGTGCCCGACATGCAGACGGAAGCAGGCGCTACCATTTTGAAACACAGCACCGCCTAGACGCGAGCGAAACCAACACGCGTCCCGCCTTCCCTTCGTTTCAACAATCAAACAATGCGTTTAATCTGCTTCTAACCAACTTAACTCGAGTCTTTTCGCCTCCAGCCATAAATATTCAGGAGGACAAAAGGAGTTGGCCCTGTAGAAACACACCTGTAGAGTCGGAGGATTGTGAGGAGGGAGCTTTCTCAACCGCCATGGATAAGAGCCACACAGTGAAGCTCTTCGTGGGCAACCTGGCATTGGACACCACCCAGGAGGAGCTGTCAGCCATCTTCGAACCCTACGGCCAGGTGGTCAGCTGCAGTGTGCTGCGACAGTTTGCCTTCGTCCACCTGCAGGGTGAGGGTGCTGCCGAGCGCGCCATCCGTGAGCTCAGCGGACGGGAGTTTCGCGGACGGAATTTGGTGGTGGAAGAGTCGAGAGGAAGGCCGTTGCACTCCACCAAGGTGTTTGTGGGTAATCTGAGTGGGATGTGCACCACTGAAGACCTGCAGCAGCTGTTTCAGACGTTTGGAAAAGTTCTTGAGTGTGACAAAGTCAAAGCCAGGCATTCCTCTTCCGTAGGCTATGCCTTTGTCCACATGGAAAACAAGGAAGATGCTCTTCAGGCCATCGAGGCCCTGCATGGCACCTCGTTTAAGGGTCGACCCCTGTCTGTAGAGCTGTCCAAGGTCCAGCCCAGCAAGCAGGCGCCTACGGGAAAAATCCCCTGCGTTAACTGTGGGAAGCAGGGCCACTATGCAGGAGAATGCCCTGTAGGCAAGCCTTCTCTGGAGCAGTACCAGAGTCAGGCAGCGGTCCTGGCCGCTGCTGCTGCCGCCGCCGCCGGCCTGCCTCTACAAGTCCAACAAAGTGTGCACAATTCAGTCTACAACACCTCCACCTTTGATCCCACATACGCAGCTCTCACTGGGATCACCACAGGCACACGCACTGACGGAAATCCAGTGAATCCAGCTGTTTATGGCGCCCTTGCCAGCCAGGTGTATGGTGCCAATGTTGCCAGTCAGCTTTATGGAGCAGTGGCCAATCAGGCAGCTCTCACATCAGGCGCCACCCAAATGTACAGCTCGATGACTCCCAACATCTATGGCCAGATTGCTGCGAACCCTGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTGCTGCTTACACGACGCCAGTTTACACCCAAGCTATGGCCAACCACCCTGTCTATCTTGCTGCTGGTCATGGAATAGAAATGCCAACAGCAGCAGCTGCGGTCAACCCTGCCTACACTGTATCTCAAGCAATCTATGGTGCAGCCACACCAGCCTACGCTCATATAAGCGCCATGGGAGCAGCAGACCCTACGACAGCCATCTTTGAGGCAGCCAGACAGGCACATTACTTTGCCCAGGGCCAGCAGGTGGTGGCCGAGCAGCAGTCGGTGGCCGCTGCAGCAGCAGCGGCAGCTGCTGCGGCAAAGTCTGGTGAGAGGGACCGTAGTCCTTTACGGAGGTCGGTACCTTTGCTACCAGACCCAGTGATGAAGCCTTTCATCTACCAGAGAGCCAAGCCTCGCCGACCCCTGCTACCCACACCAGCTGGCCGAGCGGCAGAGGAGGCAGTGGAGGCTGCTGAGGACCCCATGGCCAGGTACTATGCAGAGTACTACCAGCAGCTGCAGCAGTACCCTCAGTTCCAGTATGCCTATCCACCGCCCAACACAGTGACAGCCATCGCTGGCATGCCGGGAGTGTCAGCAGTCCCTGCTGTACCAACGATGTCCGCCCAGCCAGTGGCCACGCTGGATGCCCTCAGGCCAGTGGTCCCTACTGCTGCGGCAGTGGCAGCCGCCATAGCAGCGCCCAGGGTGTATGAGCCGCCGTTGCCGCCGCCCACGCGAAAGGAGGCCATCCTCCGCCGCCCCGAACTCTCCCTTCACACCCCTGAGCCCCCCTTCCGATAG

Transcript

Csp01G005340.1

atgacaccaATGTGTGATTCCAGACTCCAggagcaggttttcatggtcaagaagTCACagtatgaggCAGCATCCTctggtgcagcagcagcagcagcagccgcccTCCCCCTCTGCAGCCTCTCCAGCAGTGCCCGACATGCAGACGGAAGCAGGCGCTACCATTTTGAAACACAGCACCGCCTAGACGCGAGCGAAACCAACACGCGTCCCGCCTTCCCTTCGTTTCAACAATCAAACAATGCGTTTAATCTGCTTCTAACCAACTTAACTCGAGTCTTTTCGCCTCCAGCCATAAATATTCAGGAGGACAAAAGGAGTTGGCCCTGTAGAAACACACCTGTAGAGTCGGAGGATTGTGAGGAGGGAGCTTTCTCAACcGCCATGGATAAGAGCCACACAGTGAAGCTCTTCGTGGGCAACCTGGCATTGGACACCACCCAGGAGGAGCTGTCAGCCATCTTCGAACCCTACGGCCAGGTGGTCAGCTGCAGTGTGCTGCGACAGTTTGCCTTCGTCCACCTGCAGGGTGAGGGTGCTGCCGAGCGCGCCATCCGTGAGCTCAGCGGACGGGAGTTTCGCGGACGGAATTTGGTGGTGGAAGAGTCGAGAGGAAGGCCGTTGCACTCCACCAAGGTGTTTGTGGGTAATCTGAGTGGGATGTGCACCACTgaagacctgcagcagctgtttcagacGTTTGGAAAAGTTCTTGAGTGTGACAAAGTCAAAGCCAGGCATTCCTCTTCCGTAGGCTATGCCTTTGTCCACATGGAAAACAAGGAAGATGCTCTTCAGGCCATCGAGGCCCTGCATGGCACCTCGTTTAAGGGTCGACCCCTGTCTGTAGAGCTGTCCAAGGTCCAGCCCAGCAAGCAGGCGCCTACGGGAAAAATCCCCTGCGTTAACTGTGGGAAGCAGGGCCACTATGCAGGAGAATGCCCTGTAGGCAAGCCTTCTCTGGAGCAGTACCAGAGTCAGGCAGCGGTCCTGgccgctgctgctgccgccgccGCCGGCCTGCCTCTACAAGTCCAACAAAGTGTGCACAATTCAGTCTACAACACCTCCACCTTTGATCCCACATACGCAGCTCTCACTGGGATCACCACAGGCACACGCACTGACGGAAATCCAGTGAATCCAGCTGTTTATGGCGCCCTTGCCAGCCAGGTGTATGGTGCCAATGTTGCCAGTCAGCTTTATGGAGCAGTGGCCAATCAGGCAGCTCTCACATCAGGCGCCACCCAAATGTACAGCTCGATGACTCCCAACATCTATGGCCAGATTGCTGCGAACCCTGCGgctgctgctgccgccgccgccgccgctgcTGCTTACACGACGCCAGTTTACACCCAAGCTATGGCCAACCACCCTGTCTATCTTGCTGCTGGTCATGGAATAGAAAtgccaacagcagcagctgcgGTCAACCCTGCCTACACTGTATCTCAAGCAATCTATGGTGCAGCCACACCAGCCTACGCTCATATAAGCGCCATGGGAGCAGCAGACCCTACGACAGCCATCTTTGAGGCAGCCAGACAGGCACATTACTTTGCCCAGGGCCAGCAGGTGGTGGCCGAGCAGCAGTCGGTGGCcgctgcagcagcagcggcagctGCTGCGGCAAAGTCTGGTGAGAGGGACCGTAGTCCTTTAcggaggtcggtacctttgctACCAGACCCAGTGATGAAGCCTTTCATCTACCAGAGAGCCAAGCCTCGCCGACCCCTGCTACCCACACCAGCTGGCCGAGCGGCAGAGGAGGCAGTGGAGGCTGCTGAGGACCCCATGGCCAGGTACTATGCAGAGTActaccagcagctgcagcagtacCCTCAGTTCCAGTATGCCTATCCACCGCCCAACACAGTGACAGCCATCGCTGGCATGCCGGGAGTGTCAGCAGTCCCTGCTGTACCAACGATGTCCGCCCAGCCAGTGGCCACGCTGGATGCCCTCAGGCCAGTGGTCCCTACTGCTGCGGCAGTGGCAGCCGCCATAGCAGCGCCCAGGGTGTATGAGCCGCCGTTGCCGCCGCCCACGCGAAAGGAGGCCATCCTCCGCCGCCCCGAACTCTCCCTTCACACCCCTGAGCCCCCCTTCCGATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034506	Domain	RBM14, RNA recognition motif 1	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-