Gene detail

Detailed information of Csp01G004040.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp01G004040.1	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	Chr01	16369468	16377814	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp01G004040.1

GGAAGTTGCTTTTCCATTTCTGTCGCTGTCGAGGAGCTGGATGAGGGGGCGACAGAGGAGGTGGAGTGCAGGGTGCAGCCAGTGCAGACATAGCGGTTCAGGCCTCTGATTTTCCTCCGCCTGGTGGCTGACTTCACTGCACCGCACCTCTTAACGAGGTAAACTGCAATCTGGATTTCAAACTAGAAACAGACGAGAGCCGATTGGGAACCACAGGAATGAAAGAACAATAATACTGACAGCGAAAGAAAACCGGGAGCGACAGCGTAAACGAGCCACCTAAGAGGAGACATTTCCCCGGCCAGACGACGAATTTAGCGCGGAGGCAAAGAAGGGGAGGAATTAACGCGAGACGGACTGATCCATAACAAAAGAGACCTTATCACTAGGCAGCCATGGGAGATCCAGATTTGGACTTCCAGACAGGTGATGCTGGGGCATCCGCCACCTACCCCATGCAGTGCTCGGCTCTGCGTAAAAATGGCTTTGTTGTGCTGAAAGGACGACCCTGCAAGATCGTTGAGATGTCCACCTCCAAGACTGGCAAGCATGGCCATGCTAAGGTCCACCTGGTTGGTATCGACATCTTTTCTGGTAAGAAGTATGAAGATATCTGTCCTTCCACCCACAACATGGATGTCCCCAACATCAAGAGAATGGATTATCAGCTGATTGGGATCCAAGATGGCTACCTGTCCCTGCTCCAGGACAGCGGGGAGGTGAGAGAGGACCTCAAGATTCCTGAGGGAGATCTGGGCAAAGAGATAGAGAACAAGCACGATGCTGGAGAGGAGATCCTGATCACCGTTCAAAATGCAATGAATGAAGAAGCTGCAATTGGCATCAAAGCCTTGGCTAAATAAGCCACTGCAGTGGACCAAGGGGAAGGCAACTCCAGTCACCAAGATCCAAGGCTGTCGCCAAAGTTTGATGTTTAGATTTTCCCTTCGGTATTACTGAAAAATACATTCTGAAGTGTTATTCACTATTATGTATATCCACCATCCTGCAGATATTGTTTTACCATGTTACTGCATTGCATAatgatatttgtttgtgtatatatttgtttaAACTGGGCAGTGATGAGTATGTTCAAATTTTGAACACACTTATCGAATTAGTTTTTCTCACGCAGAATTTGCTGATTTGCCTACCCCTTATGTGCTTTTTGTTTAATGTTGACCCTATTATGAGCATGTTAATCATTATTGAATAGCACTATCAGTATAAATGAAAGCTTATGGTTCATATTTCAGATATCAGCAGTGTTTACTCTTTTTCTGTTGGTTGCACTTAATTTTATGGCCTGATCTAGAGAGTTGCTTCTTGTATTCCCTATTTCTCCAAGTCTGTAGCATTGTTATAATTGTCGGATCTAATTGTTTCATGTCCTCTCTCGTCTGCATTGTCTCATCTGCAGACTGAGCTGTAGAAGTATCCACAAAAAAGATGTGCAAAAGTGTTGTACAATGTTTCCCCCTGTAGAAGCTTGTTAAAACAGTCATTAAAATATATtccttgtttattttttctttagcATCTTCCTTCTCTGACTTCTCCTTCATCTTTCTTCTCATTCCTTCCCCTTGTAATTCTGTTTCAGGGGCAAACGAGATGCACTGGACCTGGGGAAAAGGAGGGGATATTGCCTCGTCAATGCTATTGTCCCTCTTTATTTCTTCCCGTCTTGGTTTTTCATACTTTCCCCCTTAATGTTTTCTGACCCTCCTTTGGGTTCAATtgggaaaaaaaacctttagtaAATAATTCGAAATGTTAAATAGTAAAGAAACATTATGTACATGTACACGTATGAAGTCACATTTGAGTCCGAACATATAGTATAAAACAAAAGAAGTCATGAAGGAAGGTCTCCGACTAAGGACTGGGTAAATATTCAGTAGCTACCTACAATCAGGgtaaagaaatgtgtttttttttgtttccctgTTTTATGAAGGGCTTCAACTCAAGATCTGCATTATTCTGTTGAAGTTTATCACATGAAACTTGTCAATTAAACAAAGGTTACCAACATTGCATACCAAGgttgtttctttttgtcttgATTTTAAGTGTCAAAAGGAAACGCAATCCCCTGCCTCAAGAAGACAAATTCCAATCTGCTGAAAAGTTCATCAGCCAGATCTTAATTTGCTCCCACCCACTCCTTTAAAAACCCCTTTGCAGAGGCCGTCAGAGCGGGCCTTCTCACAGAGCTGTTTGGAGAAAGTGGAGTATCATTTGGCATGCTCTCCGTTCAGGAGGCAGATGAGTTGTGGCTTTTTGGTATCCCAATGTTGTGTTCATACAGCAACTCTAAACTGTGCAGAATGTCTTCATGGccaaaaaaacaagaataaagATGAGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01287	eIF-5a	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	Domain	Interproscan
PF21485	IF5A-like_N	Translation initiation factor 5A-like, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001884	Family	Translation elongation factor IF5A-like	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR019769	PTM	Translation elongation factor, IF5A, hypusine site	Interproscan
IPR020189	Domain	Translation elongation factor, IF5A C-terminal	Interproscan
IPR048670	Domain	Translation initiation factor 5A-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045901	Biological Process	positive regulation of translational elongation	Interproscan
GO:0045905	Biological Process	positive regulation of translational termination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-