Gene detail

Detailed information of Csp01G003250.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp01G003250.1	PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED	Chr01	13853554	13935221	+

Gene Structure

More details in Jbrowse Sequence

CDS

Csp01G003250.1

ATGACTGAAATGTCTCAAAGTCAGTGTGCTGCCTTGGTTGGTGAAGACCAGCCCCTCTGCCCAGACCTCCCTGAACTCGACCTGTCAGAGCTGGACGTCAGTGACTTAGATGCAGACAGCTTCCTTGGTGGCCTCAAATGGTACAGCGACCAATCAGAGATCATTTCCGCTCAGTATGGCAACGAAGCATCCAATCTCTTCGAGATAGATGAAGAACATGAGGCCAATTTGCTGGCAGTGCTTACAGAGACCCTGGACAGTATCCCGGTGGATGAGGACGGATTACCTTCGTTTGAGGCCCTGGCAGATGGGGACGTGACCAATGCCAGTGACCGGAGCTGTCCCTCCTCCCCTGACGGCTCGCCACGAAGCCCAGAACCTGAGGAGCCTTCCCTGCTGAAGAAGCTCCTTCTGGCACCTGCAAACTCCCAGCTCAGCTATAATCAATACACAGGTGGCAAGGCACAGAACCATGCAGCCAGCAACAACCACCGGATCAGACCACCACCTGCCGTCGTCAAGACGGAGAGCCCCTGGAATGGCAAAGCAAGAGGGGGATCCTGCCAACAGAACCGCCCGGTGAGGCGGCCTTGCACTGAGCTTCTCAAATACCTAACGGCCACCGATGACATCCTGCTCCACACCAAAGCCAGTGAAGCCAAAGGCACCTGGGGGGGTGCCAGTAGCAGGGACAAGAGTGGCTTGGGTCTTGGCGCGTCTTCCTCCTCTTCTTCGCCATCCTCATCATCCACCTCTTCGTTCTCCTCCCTCTCCTCCAACTCGTCTTCCTCTTCCTCCACAACCTCCAAGAAGAAATCAGCTGTACCAACTCAACAACAGCAACAAGAACAACAACAACAACAACAACAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCCGCATCACCAGCGAGGTGAGAGCCGGGCTGCAGGCGAGTGTAGTGTGGCTGGTGTTGGGGCTAGGAAGTGGCAGCGTTGCAGTCACGATGACGGGTTTGAGGAGTCGGAGGGTGCTTCTGTCCCTGTCGGCCACAGAACCTCTGCCTGCGGCCATGCCCGCCCCAAACTGGAGCACGGGCCGCCCAGTGAAGAAGGAAGGCCGCCAGGCGATGTGGGCCGCCTGGCCGCCGCTAGGTTTATTAGGTATATGCATTCTTATTCCCTCCCTCCCCGAGAGGCGAGTCACAGCTGTGAGCATTGCCGAGAGGCTGCGGGCGCCACTCAGGCTAGTAAGGGCTTTGGCAGACAAGGCCGTAGTAACAGTAACTGTGCCAGCCGTGCACCCCATAAGCACATCACAGTGACTATTAGGAAAAGAGATGAGAAGCCGGGGCACCCCTTACTTAGCCAGCTGCTCACCTCCAAACAGAGGCCTGCTCAGTATCGAGCCCACTTACCTCCACCTAAGATCACCCCTTTACCCAGCACTCTGAGCAAATCAGCAGGTAAGAGGTCTGAGAGCCTAGCCCAGGTTGTTTCAAAGGTGGAGGAAGAAGAGCTGAGAGGGACCACTGACAGTAGAAACCGGGCAGCGAGTCAGATTAAAGAGACTCACTCAGTGCCCCTATTGTCACGTCTTGCCCTAGACCAAGAGAGCTGGGTTAGCCAGCCAGACTCTGGGCTTGACTTGGGCTTTGGACTAGAGCTAGCGTGTCTAAACCATGGGGAGGATGTTGACCATAATGATGATGATGATGGTGTTGATGATAATAATGATGTTGATGATGATGCTGACCATGTCACGGGCAGCCCTGCTGCGGTGCTCTCACAAGGCCCACCAAGCCCACTCTTCCCAGATACTAGAATTGCAGATCCCGCCCCTCCCTGCATCATACAAGGGCAAGGGCACCCACACAGACAGACACTCAGCGAACACCCCGACGACCAGGGCCACCCGTTGTTAGCCAAACCAACCACCTTGCCACTTCCTTTGACCCCAGAGTCTCCAAATGACCACAAGGGATCACCGTTTGAGAACAAAACCATTGAATGCACATTAAGTGTGGAGATTGCTGGAACCCCAGGTCTGACACCACCTACCACGCCCCCACACAAAGCCAGTCAAGAGAATCCTTTCAAAGCATCGCTCAAAACCAAGTTGTCTTCATGTTCCTCCTCAGCCTTGGCATGCAAAAGAGCCAGGCTGAGCGAGTTGGGCCCCAGCGCTCTGGCCCCGGCCACAGGTGCCTCAGGCGGGGGCCCCACAAGGAAGGGTCCCGAACAGACTGAGCTTTATGCCCAGCTGAGCAAAGCGTCCACCACCCTCCCTTTCTCCGTCACCCAACACACAGTGGGGGGTGGCCTTGAGGAGTTTCGCAGCACTAGCAACAATAAGCGGGCGGCGCCCCGTAGCTACAGTGACCATGACTATTGCCAGGCATCAGCTAGCACTAAGAAGGATGGAGGCACAACCACTGTTACCGTGACTACTGCAGAAATGACAGTCCCCTCAGGTGTCACTGCTGCTCCCATGCCATCTACAGGCAAAGTGGAGGACAGGCATGTTGAATGTAAGGACTCAGCCATGCCGCTGTCCTCCTCATCATCTTCATCTTCTTGTTCTCCATTATCAGCTTCATCTGGTCCTTTGGATAAGCAGCAGAATTTTGATGGAGAAGCAGCCCGGGTCCGGGGTTTAGGGAAGCAGACCCTTACACAAACCACCCAGACCCCATTAAAAGAGGCCATTAATGACAGAGACCAACAGCACCCTTCTACCACCAGCCGAAAGCAACTGTGTGACAATGAAATCCGAGCAGAACTCAATAAGCACTTTGGCCACCCCTTGCAAGCCCTTTATAGCCAAGGTGGCCAGGAGAGAGAACCAGGCAGCAAACTGATTAAGGCAGTGGTCCCTCAGTCCCTTGAGGAGGGAGGGGATGGCTACCACTCCCAGAAGCTACCTGGCTCCTGCTACCTGCACCCAGGGTTCCCGCCTTTCCACGAAGAGCTGGAGCTGGATGAGGGCCGTGAGAGTCGCTTCCTCTATCCGTGGGAGGGCACCCCTCTGGACCTACTCTTTGACTGCCCCCCCTGCTCTCCGTCCTGCTCCCCACCATCCAGCTGCTCCCCTTCACGAGGCTCTGTCTCCCCACCTTCCTCCCTCCTCCTTTCTCCCAGCAGGCCTTTCTGCTGGACCAGCGGTGGGTCACGATCCCGTTCTCGTTCACACTCTGGTTCCCGCAGCTCCTCCTCGCACCACCGGAGGCGCTCCCTCTCCAGCTCACCTGACAGAAGCCCCTCCTCCTGGTCTCGCCACAACGTAGACTCAAGCACTTTTCGTTCCAGGACTCAAAAGAGCCCCCACCCTCAGTCTCGATCTCCTCTCAGCCGCAGGCCAAGGTATGACAGCTACGAGGAGTACCAGCACGAGAGGCTGAAAAGGGAGGAGTACCGCCGGGACCACGAGAAGCAGGAATTTGAAAAGGCTGAGCAGAGGGAGAGGCAAAGGCAAAAAGCAATAGAGGAGAGACGGGTGGTGTATGTGGGGCGACTGAGGTCCGACTGCACCCGGACAGAGTTGAAGCGCCGCTTTGAAGTCTTTGGCGAAATTGAAGAATGTGCAGTGAACTTGAGGGACGATGGGGACAATTTTGGCTTCATCACGTTTCGCTACACTTGTGACGCCTTTGCCGCCCTTGAGAACGGACACACCTTACGCAGGTCAAACGAGCCTCAGTTCGAGCTGTGCTTTGGCGGGCAAAAGCAGTTCTGCAAATCACATTACACAGACTTGGACTCTCATTCGGATGACTTTGATCCAGCCTCCACAAAAAGCAAGTATGACTCAATGGATTTTGACAGCTTGCTGAAGGAGGCCCAGCGCAGCCTGAGAAGGCTAAACTGTAAATTGGGACTGACTGACTTTAACGCAACATGCCAACAAGCAGGAAGCATGCTGGATGTAGATCATCCTCCTTTGTACCCTACTTTTTTCCCCTTGCTTTTTTCATTCTGCCCCCCAACCACACACACACACACACACCCCTCACTCACACTTTCTCCTCTCCAAGGCCAGTCTTCATCATAG

Transcript

Csp01G003250.1

ATGACTGAAATGTCTCAAAGTCAGTGTGCTGCCTTGGTTGGTGAAGACCAGCCCCTCTGCCCAGACCTCCCTGAACTCGacctgtcagagctggacgTCAGTGACTTAGATGCAGACAGCTTCCTTGGTGGCCTCAAATGGTACAGCGACCAATCAGAGATCATTTCCGCTCAGTATGGCAACGAAGCATCCAATCTCTTCGAGATAGATGAAGAACATGAGGCCAATTTGCTGGCAGTGCTTACAGAGACCCTGGACAGTATCCCGGTGGATGAGGACGGATTACCTTCGTTTGAGGCCCTGGCAGATGGGGACGTGACCAATGCCAGTGACCGGAGCTGTCCCTCCTCCCCTGACGGCTCGCCACGAAGCCCAGAACCTGAGGAGCCTTCCCTGCTGAAGAAGCTCCTTCTGGCACCTGCAAACTCCCAGCTCAGCTATAATCAATACACAGGTGGCAAGGCACAGAACCATGCAGCCAGCAACAACCACCGGATCAGACCACCACCTGCCGTCGTCAAGACGGAGAGCCCCTGGAATGGCAAAGCAAGAGGGGGATCCTGCCAACAGAACCGCCCGGTGAGGCGGCCTTGCACTGAGCTTCTCAAATACCTAACGGCCACCGATGACATCCTGCTCCACACCAAAGCCAGTGAAGCCAAAGGCACCTGGGGGGGTGCCAGTAGCAGGGACAAGAGTGGCTTGGGTCTTGGCgcgtcttcctcctcttcttcgcCATCCTCATCATCCACCTCTTcgttctcctccctctcctccaactcgtcttcctcttcctccacaaCCTCCAAGAAGAAATCAGCTGTACCAACtcaacaacagcaacaagaacaacaacaacaacaacaacaacagcagcagcaacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcatccgcATCACCAGCGAGGTGAGAGCCGGGCTGCAGGCGAGTGTAGTGTGGCTGGTGTTGGGGCTAGGAAGTGGCAGCGTTGCAGTCACGATGACGGGTTTGAGGAGTCGGAGGGTGCTTCTGTCCCTGTCGGCCACAGAACCTCTGCCTGCGGCCATGCCCGCCCCAAACTGGAGCACGGGCCGCCCAGTGAAGAAGGAAGGCCGCCAGGCGATGTGGGCCGCCTGGCCGCCGCTAGGTTTATTAGGTATATGCATTCTTATTCCCTCCCTCCCCGAGAGGCGAGTCACAGCTGTGAGCATTGCCGAGAGGCTGCGGGCGCCACTCAGGCTAGTAAGGGCTTTGGCAGACAAGGCCGTAGTAACAGTAACTGTGCCAGCCGTGCACCCCATAAGCACATCACAGTGACTATTAGGAAAAGAGATGAGAAGCCGGGGCACCCCTTACTTAGCCAGCTGCTCACCTCCAAACAGAGGCCTGCTCAGTATCGAGCCCACTTACCTCCACCTAAGATCACCCCTTTACCCAGCACTCTGAGCAAATCAGCAGGTAAGAGGTCTGAGAGCCTAGCCCAGGTTGTTTCAaaggtggaggaagaagagctGAGAGGGACCACTGACAGTAGAAACCGGGCAGCGAGTCAGATTAAAGAGACTCACTCAGTGCCCCTATTGTCACGTCTTGCCCTAGACCAAGAGAGCTGGGTTAGCCAGCCAGACTCTGGGCTTGACTTGGGCTTTGGACTAGAGCTAGCGTGTCTAAACCATGGGGAGGATGTTGaccataatgatgatgatgatggtgttgatgataataatgatgttgatgatgatgctgaCCATGTCACGGGCAGCCCTGCTGCGGTGCTCTCACAAGGCCCACCAAGCCCACTCTTCCCAGATACTAGAATTGCAGATCCCGCCCCTCCCTGCATCATACAAGGGCAAGGgcacccacacagacagacactcaGCGAACACCCCGACGACCAGGGCCACCCGTTGTTAGCCAAACCAACCACCTTGCCACTTCCTTTGACCCCAGAGTCTCCAAATGACCACAAGGGATCACCGTTTGAGAACAAAACCATTGAATGCACATTAAGTGTGGAGATTGCTGGAACCCCAGGTCTGACACCACCTACCACGCCCCCACACAAAGCCAGTCAAGAGAATCCTTTCAAAGCATCGCTCAAAACCAAGTTGTCTTCATGTTCCTCCTCAGCCTTGGCATGCAAAAGAGCCAGGCTGAGCGAGTTGGGCCCCAGCGCTCTGGCCCCGGCCACAGGTGCCTCAGGCGGGGGCCCCACAAGGAAGGGTCCCGAACAGACTGAGCTTTATGCCCAGCTGAGCAAAGCGTCCACCACCCTCCCTTTCTCCGTCACCCAACACACAGTGGGGGGTGGCCTTGAGGAGTTTCGCAGCACTAGCAACAATAAGCGGGCGGCGCCCCGTAGCTACAGTGACCATGACTATTGCCAGGCATCAGCTAGCACTAAGAAGGATGGAGGCACAACCACTGTTACCGTGACTACTGCAGAAATGACAGTCCCCTCAGGTGTCACTGCTGCTCCCATGCCATCTACAGGCAAAGTGGAGGACAGGCATGTTGAATGTAAGGACTCAGCCATGCCGctgtcctcctcatcatcttcatcttcttgTTCTCCATTATCAGCTTCATCTGGTCCTTTGGATAAGCAGCAGAATTTTGATGGAGAAGCAGCCCGGGTCCGGGGTTTAGGGAAGCAGACCCTTACACAAACCACCCAGACCCCATTAAAAGAGGCCATTAATGACAGAGACCAACAGCACCCTTCTACCACCAGCCGAAAGCAACTGTGTGACAATGAAATCCGAGCAGAACTCAATAAGCACTTTGGCCACCCCTTGCAAGCCCTTTATAGCCAAGGTGGCCAGGAGAGAGAACCAGGCAGCAAACTGATTAAGGCAGTGGTCCCTCAGTCCCTTGAGGAGGGAGGGGATGGCTACCACTCCCAGAAGCTACCTGGCTCCTGCTACCTGCACCCAGGGTTCCCGCCTTTCCACGAAGAGCTGGAGCTGGATGAGGGCCGTGAGAGTCGCTTCCTCTATCCGTGGGAGGGCACCCCTCTGGACCTACTCTTTGACTGCCCCCCCTGCTCTCCGTCCTGCTCCCCACCATCCAGCTGCTCCCCTTCACGAGGCTCTGTCTCCCcaccttcctccctcctcctttctcccagcAGGCCTTTCTGCTGGACCAGCGGTGGGTCACGATCCCGTTCTCGTTCACACTCTGGTTCCCGCAGCTCCTCCTCGCACCACCGGAGGCgctccctctccagctcaccTGACAGAAGCCCCTCCTCCTGGTCTCGCCACAACGTAGACTCAAGCACTTTTCGTTCCAGGACTCAAAAGAGCCCCCACCCTCAGTCTCGATCTCCTCTCAGCCGCAGGCCAAGGTATGACAGCTACGAGGAGTACCAGCACGAGaggctgaaaagggaggagtaccGCCGGGACCACGAGAAGCAGGAATTTGAAAAGGCTGAGCAGAGGGAGAGGCAAAGGCAAAAAGCAATAgaggagagacgggTGGTGTATGTGGGGCGACTGAGGTCCGACTGCACCCGGACAGAGTTGAAGCGCCGCTTTGAAGTCTTTGGCGAAATTGAAGAATGTGCAGTGAACTTGAGGGACGATGGGGACAATTTTGGCTTCATCACGTTTCGCTACACTTGTGACGCCTTTGCCGCCCTTGAGAACGGACACACCTTACGCAGGTCAAACGAGCCTCAGTTCGAGCTGTGCTTTGGCGGGCAAAAGCAGTTCTGCAAATCACATTACACAGACTTGGACTCTCATTCGGATGACTTTGATCCAGCCTCCACAAAAAGCAAGTATGACTCAATGGATTTTGACAGCTTGCTGAAGGAGGCCCAGCGCAGCCTGAGAAGGCTAAACTGTAAATTGGGACTGACTGACTTTAACGCAACATGCCAACAAGCAGGAAGCATGCTGGATGTAGATCATCCTCCTTTGTACCCTACTTTTTTCCCCTTGCTTTTTTCATTCTGCcccccaaccacacacacacacacacacccctcactCACACTTTCTCCTCTCCAAGGCCAGTCTTCATCATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034605	Family	PGC-1	Interproscan
IPR034833	Domain	PGC-1alpha, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15528	PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0030374	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051091	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-