Gene detail

Detailed information of Csp01G002550.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp01G002550.1	SEMAPHORIN	Chr01	11994151	12045137	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp01G002550.1

ATGATGAGTCCTGCGGTTACTATGTTGATCCTGCTCCTGGTGCTACTATGCCTGCTCTGCAGAGCCTCCTGGGCTGCGACCCTGAGCGGGCTGGGAGATGGAACGATTCTTGGTCCAGAGGAGTTTAGGGGCGTGGCCAACTTCAGCACCTTCCTACTGGACCGCTCATCAGGCATGCTGTTCCTGGGTGCCAGAGATGCCATATTGGCTGTGGACACCAACAAACTGAACCAAAAACCACAAATGATTGTTTGGGATGTTCCGGAGGAGAAGAGGAGATCTTGTGTAGCCAAGGGAAAGACAGAGGTTGACTGCAAGAACTACATCCGTATGCTGGAGTTTGTGGGCGACGGACGCCTCTACGTGTGTGGAACCTACGCGTTTGACCCCCAGTGTGCCTTTTTGGAGCTGTCCTCTTTCACCCTGGAGAAAGCTGAGGGTGGAGGGGTGAAGATGGAGACGGGGAAGGGCAAATGTCCCTTTGAGCCCAGTCAGCACTACACAGCTGTTATGGCAGGTGGTACTCTATACACAGCAGCCACCAGTAACTTCCTGGGAACGCTGTTCGACATCTCCCGGGCAACGGGCCCTGAGCAGGAGCGCATCCGAACTGAACGATCCATCAACTGGCTGAGTGACCCAGAGTTTGTGAGCTCAGCCTTCATAGAGCAGTCTGCAGACAACAACCCGACAGGTGACGATGACAAAATCTACTTCTTCTTCACTGAGGTGGCCAAAGAGTATGAACTGTACACCAAAGTCAAAGTGCCCAGGGTAGCACGAGTCTGCAAGTCTGATGTGGGAGGAATGAAGACTCTGCAGCGACGTTGGACCACCTTCCTCAAGGCTGAGCTGGTGTGTGAAGACAGACCCACTGGTCGACGCTATAACATCTTAACGGATGTTTTCACCACACAACACACACCAGGCGACCCCAGCAGCACACACTTCTATGGACTGTTCACCTCCCAGTGGGAACATGAAGAGCTATCAGCAGTGTGTGTTTTCAGTCTGTCTGACATCAGCAAAGTGATGGATGGTCCCTTTAAAGAGCTGAAGAAGACCTGCGAGAACTGGATCAACCCTGAACCTGTCCCCACACCAAGACCTGGCCAGTGTTTGAACAATGCTTTGAAGGCTGGGGGGTTTGAGTCTTCCCTCAAACTTCCTGACAAGGTGTTGACATTTGTGAGAGACCACCCTCTGATGGAGAACAGTGTGACTGCAGCGCCTCTGCTGGTCAGGAAGGGAATCGCATACACTAAGCTGGCTGTAACGCTGACAGCCAGTGGAGAGGAGCAGAGAGGAGCAGTGCTGCACCTTGGAACAGACCGTGGGGAGCTCCACCGGGTGGCAGTAGTGGGCCAGAATGCCACCTTACTGCAGGAGATTCCTCTGTTCACGTCACAGGAGCCTGTCAACAACATATTACTCCACCAGGGCTGGGCTCTGGTTGGCAGCCCTTTGTCTCTGGCTCGTGTCCAGGCTGAAGGCTGCTCTCTGTATCCCAGCTGTGAGGTGTGTGCCAGAGCCAGAGGCCTAGGCTGTGTTTGGAGCACAATGGAAGGAGCCTGCAGGCCCACAACAGCAGAGCCTCCTCCAGGTGATCTGGTTGATGAAGCCTTGAGAATGTGTGACATAGGAGAGGGGCGTTGCACCCCGACAATCAGGGAGCTGCGGGTTTCTGTGGGCCTGCGCCTCCTGTTGCCATGTGTCCAGCTGTCTCCAAGGCCCTGTAGCTGGGAGCATCCTCCCCACAGACAAACCAGGCAGCACCACTCTGACCTGGAGGTGACCGTCACAGAGGACAGCCTGGGAAAATACATCTGCACCTGTCAGGAGGCTGGACCAGGTATCAGAGACCCCACCCCCTGCCGCAGAGCAGCCTATCAGCTGACACTAGAAGGCCCCACTATTGGAGGAACAGTAGCATCGGGAGGTCGCCACGTCCTGGCCGTCTACATCCTTTTCTTCTTCGGGGGTTTAGTGTTCGGTGTATTACTCCTCTACTTCATGACCCATCGGCGCAGCATTGGCCGCCAGGGTCACCACCTGCCAGATAATTCGCTGTCGTCAGAGAAGGGGCGGGACTTGTTGGGCTCCTCGGCCACGCCACAGTCCCCTAGCAGTGCCAGCCTTCTGTCGGAGGGATTCAGATTGACAGAAAAACGCAACGGGACGGCAACCACAAATATGTCTGCAACGCTTCTTGGAAACCAGGGTAATGGTGGTCACCTAAGTGGTGGCAACACCTTCAGTGGCACCCTTATGCACAGCAACCCCAGCAATGGTCATGGGAATTCCCTATATACCAACTGTAACACAAGTAGCAGTGGACTTAAGTTCACCTCTGAAATTTTAGCTGCAGACATCCTTGATGGAAGGACGGGGGAGAGGGAGAGGAGGAGGTCTAAGGGGATGGAGAGGATGTCGGCAAAGGTGGATGAGGTGGATGAGGGGCTGGGGGATGGCATAGGGGAAGGAATGAAAGGACTGGAGGAGGAGCTGGCAACCTTTCCTTTGTTTAAAGCACCTGCACCACTGGCTCAGTGTGAAGAAAGTTCAATATGA

Transcript

Csp01G002550.1

CCACTCACTCTGTCAGCGCTCGAGCTCCAGCAGATCCGCGAATCGGTTCCAGAACCCCTCACCGTGCACCCGTGCAGGCGCTCGAGCTCATGCAACACAGCGCGTGCTtggaattttatttttgttgacgGACGTGAATGTGattttattgctttattttCTCCGAACAGCCTATTTTAAACTGAAGGCGAgcggaggtttttttttttcttgtagcAGCGGGGCAGGTTCGGCGACACCGGGGCACAGAACGGTACTTGAACCCAGGACACCGCGCATTATTCCCACACGAGAGGACGGTACTTTGGAATACTTTGACACACAGTTTGTGACAACACAAATGTAGGTTAactacattattttattttctggttCTCAGCGCGTCGCTTTCCTTTAGTGGAGATCACAACCCTCCCTTTACGCTGAGCGGATGCAGGCACTTGTGTGCGCTTTACGCAGATTATCTACGAGAAGAGGAGTAAATTTCAACAAGTGACGATAACAAAATACATAAGGAAGCGTTCATTTCATTTAGAAATAAACCCCAAATTTATTTATCACCGTCTTGGACCGAGCCCTGCACCTTTTTGAACTCCGAGAAACCGGTGACGCGCGGGTCAGGATGCATCTCAGCTGAAACCTCGACTTCTGGACTTGTGTTCAAATCAGATCGGACGGTCCTCCACTTACCTCCGGGACCAGAGCAGAAGCAGAATCATGATGAGTCCTGCGGTTACTATGTTGATCCTGCTCCTGGTGCTACTATGCCTGCTCTGCAGAGCCTCCTGGGCTGCGACCCTGAGCGGGCTGGGAGATGGAACGATTCTTGGTCCAGAGGAGTTTAGGGGCGTGGCCAACTTCAGCACCTTCCTACTGGACCGCTCATCAGGCATGCTGTTCCTGGGTGCCAGAGATGCCATATTGGCTGTGGACACcaacaaactgaaccaaaaaCCACAAATGATTGTTTGGGATGTTccggaggagaagaggagatcTTGTGTAGCCAAGGGAAAGACAGAGGTTGACTGCAAGAACTACATCCGTATGCTGGAGTTTGTGGGCGACGGACGCCTCTACGTGTGTGGAACCTACGCGTTTGACCCCCAGTGTGCCTTTTTGGAGCTGTCCTCTTTCACCCTGGAGAAAGCTGAGGGTGGAGGGGTGAAGATGGAGACGGGGAAGGGCAAATGTCCCTTTGAGCCCAGTCAGCACTACACAGCTGTTATGGCAGGTGGTACTCTATACACAGCAGCCACCAGTAACTTCCTGGGAACGCTGTTCGACATCTCCCGGGCAACGGGCCCTGAGCAGGAGCGCATCCGAACTGAACGATCCATCAACTGGCTGAGTgACCCAGAGTTTGTGAGCTCAGCCTTCATAGAGCAGTCTGCAGACAACAACCCGACAGGTGACGATGACAAAATCTACTTCTTCTTCACTGAGGTGGCCAAAGAGTATGAACTGTACACCAAAGTCAAAGTGCCCAGGGTAGCACGAGTCTGCAAGTCTGATGTGGGAGGAATGAAGACTCTGCAGCGACGTTGGACCACCTTCCTCAAGGCTGAGCTGGTGTGTGAAGACAGACCCACTGGTCGACGCTATAACATCTTAACGGATGTTTTcaccacacaacacacaccaggCGACCCCAGCAGCACACACTTCTATGGACTGTTCACCTCCCAGTGGGAACATGAAGAGCTAtcagcagtgtgtgttttcagtctgtctGACATCAGCAAAGTGATGGATGGTCCCTTTAAAGAGCTGAAGAAGACCTGCGAGAACTGGATCAACCCTGAACCTGTCCCCACACCAAGACCTGGCCAGTGTTTGAACAATGCTTTGAAGGCTGGGGGGTTTGAGTCTTCCCTCAAACTTCCTGACAAGGTGTTGACATTTGTGAGAGACCACCCTCTGATGGAGAACAGTGTGACTGCAGCGCCTCTGCTGGTCAGGAAGGGAATCGCATACACTAAGCTGGCTGTAACGCTGACAGCCAgtggagaggagcagagaggagcagtGCTGCACCTTGGAACAGaCCGTGGGGAGCTCCACCGGGTGGCAGTAGTGGGCCAGAATGCCACCTTACTGCAGGAGATTCCTCTGTTCACGTCACAGGAGCCTGTCAACAACATATTACTCCACCAGGGCTGGGCTCTGGTTGGCAgccctttgtctctggctcGTGTCCAGGCTGAAGGCTGCTCTCTGTATCCCAGCTGTGAGGTGTGTGCCAGAGCCAGAGGCCTAGGCTGTGTTTGGAGCACAATGGAAGGAGCCTGCAGGCCCACAACAGCAGAGCCTCCTCCAGGTGATCTGGTTGATGAAGCCTTGAGAATGTGTGACATAGGAGAGGGGCGTTGCACCCCGACAATCAGGGAGCTGCGGGTTTCTGTGGGCCTGCGCCTCCTGTTGCCATGTGTCCAGCTGTCTCCAAGGCCCTGTAGCTGGGAGCATCCTCCCCACAGACAAACCAGGCAGCACCACTCTGACCTGGAGGTGACCGTCACAGAGGACAGCCTGGGAAAATACATCTGCACCTGTCAGGAGGCTGGACCAGGTATCAGAGACCCCACCCCCTGCCGCAGAGCAGCCTATCAGCTGACACTAGAAGGCCCCACTATTGGAGGAACAGTAGCATCGGGAGGTCGCCACGTCCTGGCCGTCTACATCCTTTTCTTCTTCGGGGGTTTAGTGTTCGGTGTATTACTCCTCTACTTCATGACCCATCGGCGCAGCATTGGCCGCCAGGGTCACCACCTGCCAGATAATTCGCTGTCGTCAGAGAAGGGGCGGGACTTGTTGGGCTCCTCGGCCACGCCACAGTCCCCTAGCAGTGCCAGCCTTCTGTCGGAGGGATTCAGATTGACAGAAAAACGCAACGGGACGGCAACCACAAATATGTCTGCAACGCTTCTTGGAAACCAGGGTAATGGTGGTCACCTAAGTGGTGGCAACACCTTCAGTGGCACCCTTATGCACAGCAACCCCAGCAATGGTCATGGGAATTCCCTATATACCAACTGTAACACAAGTAGCAGTGGACTTAAGTTCACCTCTGAAATTTTAGCTGCAGACATCCTTGATGGAAGGacgggggagagggagaggaggaggtctAAGGGGATGGAGAGGATGTCGGCAAAGGTGGATGAGGTGGATGAGGGGCTGGGGGATGGCATAGGGGAAGGAATGAAAggactggaggaggagctggcaaCCTTTCCTTTGTTTAAAGCACCTGCACCACTGGCTCAGTGTGAAGAAAGTTCAATATGAAAAAGTGTCCTGACTGCAACATTTTGCATcctccaaaaacaaaacaaaactgaatgCCACTGCGATAAATGCTAAATGGCTCCAGCCAAATGCCTTTGAATAGGAGCGGTGGCACGAAGAGAGACTACAGAGATATATGAGTAATATATAAGGTTATGTCTAACCATGTGAGCGAAAGAACTGAGACATGAAACATGTCCCAGAGTTGGGAGTCACTCAGgatgagaaaaaaatgtgtcaGATGTAAATATGAAATGTAAATACAAGCAGTCTGAGTGTGATATCTTGCAATTTCAAGGTTGCAAAGATTCAAAGATGAGGTGTCTACATGTGTAGACATGGAAAAGCCATATTGTCTCTTTAATTTCTGTTGTTGTATTCTCTTCTCCTGATGGCACTGCAAAAGACAAGTGCACTTTTAATGTCTCAgcacctctctctgtctctatttcCACCACTCAAATCCCACACCTTGATGGGTCCAAAGGCACCAAAGGACTCCTGAACCATAGACTGTCCAGTCAGAGTGCAGaaccctctgattggctgcagtgcCCATGACAGGGCTGTCCCTGCTCAAAGTCCAGAGGATGATAGGGTTGAAGGTCACCTATCAGATTTGTGTCAGTGTGGAAAGCTCAACATCCACAGCCGATGTTAGTAATGGACCTCGCAAGACACAACGCCACAATCACCTTGTTTTGTGACTGTGGATTTCAACATACATGTTTGTggttttgtcatgttttgtaataaagccTAAAAAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403	Sema	Sema domain	Repeat	Interproscan
PF19428	Sema4F_C	Semaphorin 4F C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627	Domain	Sema domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR045791	Domain	Semaphorin 4F, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-