Gene detail

Detailed information of Csp01G001690.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp01G001690.1	MYOTUBULARIN-RELATED	Chr01	8333119	8349350	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Csp01G001690.1

TGTTAGTTTTTGGATTAAGGTCGCTAACGGCGCCACCCTGTACCTGCCACTGAACGCCATTACTGCACGCTTGTAGAGGCCCCCTCGCTGAGCGATGGCCTCACCAGTCTCGGTCTACAACTCCAACGCCTTGGACGCACACATTTCAAGCaccTCCAGAGAGTCTTTGAAGATGGAGTTGTTGGCTGATGTGTCTCTGCTGCCAGGAGAGGACAGAATCATAGATAAAGACATCATCTACATGTGTCCGTTCAATGGACCCGTGAAGGGCAAAGGGTTGATCACCAACTACAGACTGTACTTCAAGAGCTCAGAGGCCGATGTGGTGGTGATACTGGACGTCCCTCTGGGTGCCATCAGTCGGGTGGAGAAAATGGGCGGGGCATCAAGCAGAGGAGAAAACGCCTATGGCCTGGAAATCACCTGCaagGACATGAGAAACCTGAGGTTTGCCTTTAAGCAGGAAGGTCACAGCAGAAGAGATATCTTCGAACTCCTCTTCAGGCACGCTTTCCCCCTCTCACACGGTCTGCCACTGTTTGCATATGTGACTCAGGAGAAGTACGAGGACAGCGGCTGGAACATCTACAACTCCTTAGAGGAGTTCAGACGGCAGGGCTTACCTAATAACAAGTGGCGTTTGACATTCATCAATAACACCTATGAGCTTTGTGACACCTACCCCACTGTGCTGGCTGTACCCATGAAAAGTTCAGAGGACGATCTCAGGAGAGTGGCTGCCTTCAGGTCAAGAGGACGTATACCAGTTCTATCATGGATCCACAGGGAGAACCAGGCAGTGATTGCCCGCTGCAGTCAGCCTCTGGTTGGCATGTCTGGTAAAAGAAACAAGGACGATGAGCGCTACCTGGACCTGATCAGGGAGGCCAATGACACTACCAAGCTCACCATCTATGATGCTCGGCCCAGCGTCAACGCTGTGGCCAACAAGGCCACAGGAGGAGGCTATGAGGGTGATGAATACCAAAATGCAGAACTCATCTTCCTGGACATTCAGAATATTCATGTAATGAGGGAATCCCTGAAGAAACTCAAAGACATAGTCTACCCCAACGTAGAGGAATCTCATTGGCTGTCCAGCCTAGAGTCTACACACTGGCTAGAGCATATTAAGCTGGTTTTGTCAGGAGCCATCCAAGTGGCTGACAAGATTTCCAGTGGAAATTCAGTGGTGGTTCATTGCAGCGACGGCTGGGACAGAACAGCTCAGCTCACCTCTCTGGCGATGCTGATGCTGGACAGTCACTACCGCACTCTCAGAGGGTTCCAGgTGCTGATTGAGAAGGAATGGATCAGCTTTGGACACAAGTTTGCCTCAAGGATAGGTCACGGTGACAAGAACCATGCCGATCAGGACAGATCACCCATCTTCATTCAGTTCATCGACTGTGTATGGCAAATGACTAAACAGTTCCCCACAGCCTTTGAGTTTAATGAGCGCCTACTGCTGACGATCCTGGATCATCTCTACAGCTGTCGCTTCGGGACTTTCCTCTTCAACTGTGAGAGCGCACGAGACCAGCATGAGCTGAGGTTGAAGACCGTGTCTCTGTGGTCTCTGGTCAACAGTAAGATGGAGATGTATTTAAATCCGTTTTACACCCCGGAATCCGGCAGGGTTCTCTACCCTGTCGCCAGCATGCGCCACCTAGAGCTGTGGGTAACATACTACATCCGCTGGAACCCACGTATACGACAACAGCAGCAGAGTCCAGTGGAGCAGCGCTACAAGGAGCTGCTGGCCCTCAGAGATGAGTACTTGAAGAAGTTGGAGGAGCTCCAGCGGTCTgactcctccccttcctcccgTCTGGCTCACAGCCCCAGCTccaacacctcctcctccacctcctcaacAACGTCACAGcaatacacacacctacaaacgcCCCTCTGAGGGCTGGTGACACTCACTCAGATATACTTGTTGACTTGCACTTATGTCGTCTTCGCTCTGATTTCTGTCAGTCTCACACAAGCAGGGAATTAATTAGGTATTGTTCAGTCCTAACCACGGTTAATTAAGAATGCTAATAAGATTTAGCTTTGATGGTTAATTCTAACACCAGAGTGGTGATGGTGATTTATGCAATATGTCACAGTACAGCCTTGTCACATACTTTTTTACACGAAAACTCGTCATACAGTGAAGCCTTAAAGACGTTTAAGGGCTTGAACACACAGGACAAACGGTGGATGTCTCTAGGTGTGTTCTGATCTGACGAAAACCTACCAGGAAAACATCCTCCAGAACCACATTCACATACTATAGATTCACTGATAAACTGAGTTCCTGTCAGTGCTCTGCTCTTTGGGAAAGAAAGGTTCGTCTCGACCTTGACGAGATAATCTTAACTCTGCTCACTCGTGTTTGAAAGCTGTAGAAGAAGATTGAACAGGCTGCCCAGTCACAGGTCAAGACCCGAGAAAAATTAACACTAGAAACAATACATTTCCTTTGAAACGTGACCCATTTCACTGTTCGATGTCAGAACGCTGCCAGGTGACATTTAGGTCTGCACCCAGCACCAGTCTATGTCCTGCTCCACAAACCGTGGCTAATCATTACAGTTCTCCCTTTTCCCTACTTGCTGCACTGCTACTGAGTGTTGTCTAGTCCTCGTGAGGCACTGCTGCAGAACTAATGCAGTCGGAGGCTGGGACTGTCTACAGTGAATTCCACTGCGAATGTCCAGCCTAGTGTGCATATCAGGTGTGTCAGATTTGAGTGGATTGATGTAGTGTTTGTTGCTTATTTACCTGCGGATGACCCAGAGCTATCAGTCAGGAGAGCTACCAGAGCTCTAGCCCTGGCAGCAAATACAGTTCTAGCCAAGAAGCAGGGTTTGTTGAGAATTAATCAGTTATTTAGGTATCTCCACGCAGCTTTGGTACAGTCTGAAATATATTCCAGATGCTCAGGATAGAGAATGGAAATGAAGGGGTGCTGGCTTCTGATTCCGGATCAGCTTGTATACTCTCACCAAACTCAGAGCCAGGAGGGTCAGTGAGCCAGGCCTTACTATGCCAAGGTGTTTGTAACCAGCACATGTCTTTAGGGACAGTGAATTGAAACAAACGGCTCCCTCCTTAAATACACtattatgtaatgtaatataatccAGCAGACTGTTTCCAGATATTTGATCCACTCTGCCATGTGAGGACGCACACGTGATCTCAAAGTACATTAGCCTTTTGGACAGGTGTTGGCTTTGTATGCAGAGTTCTTTTCCCcacattttgatttgattgtttGAGTCAATGAGTagtgttatatttattttcaatttccaTTTACTTGTCAAGTTGATTTAAATAATTGAATGGACCTCATAACAGCTTATTAGGACGTCTGACCAGATTAAtgctttgtgtgtctgcagacgtCATCATTGACACTGGTGGAAAACAAATTATCTGCAAATAAGAATGATGGGAAAGCTATAAGATATAAGATGGGCAAATTCATCTCTGAGAAGATCCGCAATATTAACTTCTcctttttcaaacattttgattaaaaaatataagaaaaaagtAGAAACTTTTGGAAGGTACcaaacactgcagaccaggaaCACCCAACTGTTTCTAATGTTAGGGCTGATCCTAACATTAGAAACAGTTAGGTGGATCTTATAATTATAACTtaatatgaatgtttttttttaatatcgtTTAGTAGCATTTTGATTCCTGACCCAAAAAGGCTTCCATAAAATCCCACAATAGGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893	GRAM	GRAM domain	Domain	Interproscan
PF06602	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR004182	Domain	GRAM domain	Interproscan
IPR010569	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR030564	Family	Myotubularin family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004438	Molecular Function	phosphatidylinositol-3-phosphate phosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0046716	Biological Process	muscle cell cellular homeostasis	Interproscan
GO:0046856	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0048311	Biological Process	mitochondrion distribution	Interproscan
GO:0052629	Molecular Function	phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity	Interproscan
GO:0070584	Biological Process	obsolete mitochondrion morphogenesis	Interproscan
GO:1902902	Biological Process	negative regulation of autophagosome assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-