Gene detail

Detailed information of Csp01G000070.1 in Chaunax sp. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Csp01G000070.1	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Chr01	476529	492878	-

Gene Structure

More details in Jbrowse Sequence

CDS

Csp01G000070.1

ATGCACATAAAGTCAAAGCAAGAAGCAGACGGGGCCATCAACCTGGACAAAATCCAGTTTCAAGAGCCTGCACCAACTGCTGGCCCTGCCCCTCAGATGGGAGATGAAAAAGCAGAGCGGGCTGGTAGAGGGCAGCAGAAGGGTGCTCCAGGACCCTTTCCTACAGAAGGAACAAGTGGGCGAGCAATTCGGTTGACTGCAAACTACTTCCGCATCGTGTCCCGCCCTCAGTGGGTTCTGTATCAGGACCATGTTGGCTTCAGTCCAGAAATGGAGTCTCGTCGTCTGAGATGTGCCCTCCTCTTCCAGCATGATGAAGCACTTGGTGCAGCATGGTGCTTTGATGGAGCTCTGCTGTTTCTGCCCCACAAATTGCACAGCAAGGAGACTGTCCTCCACAGTGAGACTAAGAATGGAGAGAAGGTTCAGATAACCGTCACCCTGACAAATGAACTCCCCCCCTCTTCTCCAGTATGCCTTCAGTTTTACAACGTCATATTCAAAAGGATCCTGAGAATCCTCAACATGCAGCAAATTGGACGCAACTATTACAACCCCAGGGATCCACTCGAAGTCCCACAGCACAACCACAAGGTGCTACGTAGCCAGACGGTCCTCGACTTCATGATCAACCTGAGGCAGCAGTGTGGAGGTCAACGCTTCGTTGAGACCTGCACCAAGGAGCTCGTTGGACTTATAGTTCTCACTAAGTACAACAACAAAACCTACAGGATCGATGATATTGCCTGGGATCACACTCCCAACAACACATTCAAGAAGGGAGACTCTCATCTCCTTCAAGAACTATTTCAACAATATGGCCTGGACATCACTGATGGGAACCAGGTGCTGCTGGTCAGCCATGTGAAGAGGTTCAGTCCTGCTGGAGCTCCTCCTCCTGGCCCTGCCATGCTCATCCCAGAGCTGTGCTACTTAACAGGCTTGACTGATAAGATGCGATGTGACTTCAACATCATGAAGGACTTGGGCTTCCACACCAGACTGAACCCAGAGCAGAGGGAGGGACGCCTCAAAAGATTTGTCACAAATATACAGAGGCACGCTGATGCTCAGGCCGAGTTGGATAAGTGGGGACTCAGCTTTGATAAGGAACTCCTCAATTATGACTACGACCCCGTAACAGCTGACTGGGCCAGAGAGATGCGGGGGGTGCCTCTGATTAGTGCTCCGCCGCTGGAAAACTGGATCCTGTTTTACACCCGTCGCAACAGCGGTGAAGCCCAGACCCTCCTGCAGACCCTCCATAGAGTCGAGTATGAGGATCATCAGGGGTCTCTCCTCAGAGCCCTGCAGCACAATGTTGGACCCCAAACACAGATGGTGGTGGTGGTCCTCTCCAGCAACAGGAAGGACAAGTACGACAGCGTCAAGAAGTACCTCTGTGTGGACTGCCCCATTCCCAGCCAGTGTGTGCTGTCCCGTACTCTGAATCGAGCCGGGGCTCTCATGACTGTGGCTACCAAGATTGTACTGCAGATGGCTTGTAAGATGGGAGGAGAGCTCTGGAGTGTGGAAATCCCCCTCAAACATCTGATGATTGTGGGCATCGACTGCTACCATGACATTACAGCTGGAAAAAGGTCCATCGGAGCGCTGGTGGCCAGCCTCAACCCGACCATGAGCAGGTGGTACTCAAAGTGTGTGCTGCAGCACAAAGGTCAAGAAATCATGGATGGACTGAGTCAGGCCTTAACTGGGGCCCTGGGAGACTACCTGAAGTTCAACAAGTGCCTGCCTTCGCGCATCATTGTGTACCGAGACGGAGTTGGAGACGGCCAGCTGTCCAGCGTGGTCAACTATGAGGTGGCACAGATCAAGGACTGCATCAAGAAAATGGGACAGGACTACATGCCCAAGCTGAGTGTGGTGGTGGTGAAGAAGCGCATCGCCACCAGGTTCTTCGCCCGCTTGCACGGCAAGGTGACCAACCCCCCCCCCCCCCCCCCGGCACCGTCATTGACTCAGAGGTCACCCGTCCAGAGTGTTAGCATTGTCCTGAGGGAGGGAGGCAGGTATGACTTCTACATCGTGAGCCAGGCTGTCCGCAATGGATGCGTCTCCCCGACCCACTACAACGTCGTGTTCGACACCAGCGGACTGAAGCCTGACCACATGCAGCGGCTCACCTACAAGCTGTGCCACATGTACTTCAACTGGCAGGGGGTCGTCAGAGTGCCCGCTCCCTGCCAGTACGCCCACAAGTTGGCTTTCCTCGTGGGTCAGAGCATCCACAGGGAGCCCAACGTCAAGCTGGACGACCTGCTCTTCTATCTTTGA

Transcript

Csp01G000070.1

atgcacataaagtcaaagcaagaagcagacggggccatcaacctggacaaaatccagtttcaagagcctgcaccaactgctggccctgcccctcagatgggagatgaaaaagcagagcgggctggtagagggcagcagaagggtgctccaggaccctttcctacagaaggaacaagtgggcgagcaattcggttgactgcaaactacttccgcatcgtgtcccgccctcagtgggttctgtatcaggaccatgttggcttcagtccagaaatggagtctcgtcgtctgagatgtgccctcctcttccagcatgatgaagcacttggtgcagcatggtgctttgatggagctctgctgtttctgccccacaaattgcacagcaaggagactgtcctccacagtgagactaagaatggagagaaggttcagataaccgtcaccctgacaaatgaactccccccctcttctccagtatgccttcagttttacaacgtcatattcaaaaggatcctgagaatcctcaacatgcagcaaattggacgcaactattacaaccccagggatccactcgaagtcccacagcacaaccacaaggtgctacgtagccagacggtcctcgacttcatgatcaacctgaggcagcagtgtggaggtcaacgcttcgttgagacctgcaccaaggagctcgttggacttatagttctcactaagtacaacaacaaaacctacaggatcgatgatattgcctgggatcacactcccaacaacacattcaagaagggagactctcatctccttcaagaactatttcaacaatatggcctggacatcactgatgggaaccaggtgctgctggtcagccatgtgaagaggttcagtcctgctggagctcctcctcctggccctgccatgctcatcccagagctgtgctacttaacaggcttgactgataagatgcgatgtgacttcaacatcatgaaggacttgggcttccacaccagactgaacccagagcagagggagggacgcctcaaaagatttgtcacaaatatacagaggcacgctgatgctcaggccgagttggataagtggggactcagctttgataaggaactcctcaattatgactacgaccccgtaacagctgactgggccagagagatgcggggggtgcctctgattagtgctccgccgctggaaaactggatcctgttttacacccgtcgcaacagcggtgaagcccagaccctcctgcagaccctccatagagtcgagtatgaggatcatcaggggtctctcctcagagccctgcagcacaatgttggaccccaaacacagatggtggtggtggtcctctccagcaacaggaaggacaagtacgacagcgtcaagaagtacctctgtgtggactgccccattcccagccagtgtgtgctgtcccgtactctgaatcgagccggggctctcatgactgtggctaccaagattgtactgcagatggcttgtaagatgggaggagagctctggagtgtggaaatccccctcaaacatctgatgattgtgggcatcgactgctaccatgacattacagctggaaaaaggtccatcggagcgctggtggccagcctcaacccgaccatgagcaggtggtactcaaagtgtgtgctgcagcacaaaggtcaagaaatcatggatggactgagtcaggccttaactggggccctgggagactacctgaagttcaacaagtgcctgccttcgcgcatcattgtgtaccgagacggagttggagacggccagctgtccagcgtggtcaactatgaggtggcacagatcaaggactgcatcaagaaaatgggacaggactacatgcccaagctgagtgtggtggtggtgaagaagcgcatcgccaccaggttcttcgcccgcttgcacggcaaggtgaccaaccccccccccccccccccggcaccgtcattgactcagaggtcacccgtccagagtgttagcattgtcctgagggagggaggcaggtatgacttctacatcgtgagccaggctgtccgcaatggatgcgtctccccgacccactacaacgtcgtgttcgacaccagcggactgaagcctgaccacatgcagcggctcacctacaagctgtgccacatgtacttcaactggcagggggtcgtcagagtgcccgctccctgccagtacgcccacaagttggctttcctcgtgggtcagagcatccacagggagcccaacgtcaagctggacgacctgctcttctatctttga

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF02171	Piwi	Piwi domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003100	Domain	PAZ domain	Interproscan
IPR003165	Domain	Piwi domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031047	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0034584	Molecular Function	piRNA binding	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-