Gene detail

Detailed information of Conbi18839 in Conchocele bisecta Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Conbi18839	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	LG14	76698336	76770471	-

Gene Structure

More details in Jbrowse Sequence

CDS

Conbi18839

GAAGGTGGGGAGGAGGAGGCCAGTGACGACGACAACTCGGATGAGGAGGTTGACGACACAATGGCGGCCGTGTTTATCAGCCAGGGCACGGCGCGCCACCGCCTCGAGTTTGTAATGGGGGAGCGGGTGTTGCCATACAATATGACCGTGTACCAGGCCATCAAGCAGTACAGCAACTGCCCCGACCGCGAGAGCAGCGAGACGGACACAGACACGGAGAACCCCGTCGGCCACGCCAGTATCTGGGTACAGACCCACACAATCTGGTATCGGCCAGCGGCAGATGCCGACGAAGTCTCGTCTACAAGTCCCAAGAAGACGAGACCAGAAACTAAGCCCACAAAATCTGGTGGACGCAAGAAGGCAGATGAACTGTGGATAGATGGACACTGCCCTGTGATAGTGCCCGCCCTGAACGCCTACCTGACGGAGCGGTTGCCCGCTTTTGTCTCCGTACGCGACCCGTCACTTGAGGTGATCGCCTTACTGCGCATTCTGCACGCCTTCAACCGCTACTGGGCAACTGTATACGAAGTGCCATTTTTCTCGAAGCCTGTGTTAGCTCATACGGAGTTTGTGAGCTCCAAACTGACAGCGAAAGCCAACCGGCAGCTGCAGGACCCGCTTGTGATAATGACGGGGAACCTGCCCGCCTGGCTCGCCGAGATAGCCGCCGCCGCGCCGTTCCTGTTCCCGTTTGACACGCGGCAGCTGCTGTTCTACGCGACGACCTTTGACCGTGACCGCGCCCTCATGCGTCTCCAAGACAACTCGGTGGACACGAGCGCCAACGACTCGAGTGAGCGGGTGGCGCCTCGACTCGACAAACGACGGCGAATCATCAACAGATCGGACCTGCTAAAACAGTCGGAGAAACTGATGGAAGATCTCGGCAACTCTCGAGCCCTCCTGGAGATACAGTACGAGAACGAGGTTGGGACAGGCCTTGGTCCAACATTGGAGTTCTACGCCCTTGTATCCAGGGAATTACAGCGGTCTGATCTTGACCTCTGGAGAGGGGAGGTCATTGTGGAGAAAGACTCTACAGGCACAGAGACGGGGAACCAGTATGCATTCTCTAAGTGTGGCCTTTTCCCGATACCACTGGCACGAAACACGAAAGCTACAGTTGTGAACAAGATGAAAACCAAAACTAAATTCCTCGGCAAATTTATGGCAAAGTCGCTCATGGACTCCAGAATGCTGGACATTCCGTTTAGCCTGGTGTTCTTCAAGTGGCTGTTGGGTCAGGAGCACAGCCTCACATCCAGTGACCTGCAGTACATCGACGCTGTCGTCTACAAGTCTTTCTGTCAGCTCGAGGACATCCTTCGACAGAAACAACGCATTCTTGCCGACAAATCTCACACTGAGGAGAGCCGACAGTTGGCACTGGACAGCCTGACTATGGACGGCTGTAGTATAGAGGACTTAGACCTGGACTTCACCCTGCCCGGCTACTCGAACATCGAGCTAAAGAAGGGCGGCAAGGACATGCCAGTCGTGCTGGAGAACCTCGAGGAATATCTGCAGCTTGTGGTGCACTGGTGCCTGGTGGAGGGTGTCGCCCGGCAGTTTGAGTCGTTCCGCGAGGGCTTCGAATCCGTGTTCCCTATCGCCACGCTGCAGACCTTCTACCCAGAGGAGTTGGACCAGCTGTTCTGCGGCCAGAAGGAGGAGGTCTGGGACGCCAAGGTGCTAATGGAGTGTTGTCGGCCCGACCACGGCTACACCCACGACAGCCGCGCCGTCAACTTCCTCTACGAGATCCTCAGCTCCTACACGCCCGACGAACAACGCCAGTTCCTCCAGTTCGTAACGGGCTCCCCGAAACTGCCCGTCGGAGGATTCCGAAGTTTGAACCCGCCACTAACGGTCGTACGGAAGTCGTTTGAATCTTCGGAAAACCCGGACTCATTCCTGCCGTCTGTGATGACGTGTGTGAACTATCTAAAACTTCCCGACTACTCCACTGTCGAGCTGATGCGCGAAAAACTCGAGATTGCTGCCAAAGAAGGCCAACTCTCCTTCCACTTATCGTGA

Transcript

Conbi18839

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569	Domain	HECT domain	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR045322	Family	E3 ubiquitin-protein ligase HECTD1/TRIP12-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45670	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-