Gene detail

Detailed information of Conbi02328 in Conchocele bisecta Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Conbi02328	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	LG1	73919023	73948482	+

Gene Structure

More details in Jbrowse Sequence

CDS

Conbi02328

ATGTCTAAGCATGACAAAACAGAAGACATTTCGAAAAGATCAATGAGGAAGCGCAGAAGATATGTCCATCAATCTCGACGACAACAAAAGCCTGTGAAAGAGGACAGTGATTTTTTTGGCGTAGATATGGATGCAACCGAGTACTACTTTGATAATGGTATGAGGAAGGTATACCCTTACAGCTACACATTTTCCGCCTATGTGAAGGGACGCTGGATGGGTAGAACCATCCTGGATGTGTTTGCGACTGAGTTCAAGTCAGAAGAAAAGCAAGTACATGAGAAAAATATCAAGAATGGCCTGCTTACCGTGAATGGCAACAAGGTTTCTCCCGACTTTATATTGGGCAATAATCACCTTCTGGAGAACAGTGTGCACAGGCATGAGAACCCTGTACTGGCGACCCCCATCGAGGTGATCGCGGACACCGCAGACGTGCTGGTGGTGAACAAGCCGGCGTCCATCCCGTGCCACCCGTGTGGCCGCTACAAATACAACTCCCTCACCAGCATCCTGCACAAGGAGTACGGATACGCCAACCTCCGGATATTGTACCGACTTGACCGAATGACGTCGGGTGTGTTAATTATGCCGAAGACCACGAGTGTCTCTGTGAAGATGGAAACCGAGATACAGAAACGGCAGGTGCAGAAGGAATATTTGGCGAGAGTCGTTGGAGAATTCCCAGATGAGGAAGTGAGGTGCGACCAGCCCATATCTGTGCTATCCCAGAAGCCATCCATGTGTAAGACAGATGCCAGCGGGAAACCCAGCTCAACAACCTTTCAGAAGGTCAGCTATAATGGCAGCACCAGCGTCGTTAGATGTCGGCCCCACACCGGGAGGACACACCAGATCAGGGTCCACCTACAGTTCCTCGGATACCCGATTATAAACGACCCTCTGTACAACAGTCCTGCCTTTGGGGAGAATCGGGGTAAAGGCGGCATTCACCACAAGTCTGTCGCTGAGATAGAAACGGAGCTGTGGAAGCTTCACAACTCCGGGTTATGGCAGGCTGGGGAGAACCCTGAATATCAGAGAAAGTTCATGACTCGCAGTAGTGCAACCACTGACGGTGATGCTGCAACAGCCTGTGGTACTGGAGATGGTGGGGATACTCTATTGGACACAATGACAGTAGATAATAATGCACTAGTCAGTGCTGCAACTAGTGATGCTCGATTAGACACAACCACAGTGGTTGATGCTCGATTGGACACAACCACAGTGGGTGATGCTCGATTGGACACAACCGCAGCTGATGAAACTCGATTAGACACAACCACAGCTGGTGATGCTCAATTAGAAACAACCACAGTGGTTAATACTGGACAAGATATTTCCACAACCACAGTCTGTGATACAGATGGTGATATTACTACAACCGGGGATACTAGATTGGGTACAACCAAAATATCTGATTCTGGAGTAGATGCTTCTGCAACCCTAGTCTGTGACACTGACCCAGAAACCGGTACAACCCTTGGCAATAATGCTGGACGCATGGATGAAGATACCACAGGCAGTGATGAGCTCACATCTAGCATGGTATCGAGAGAAGCTGGTGATATTGTAGGGACAGTTGGGAATAACTGTGAGAGTTCTGGTGATGCACTGTTGGAGTCTCAAATAGATACTGATCTCGTGTCGGAATCACCACCACATAAAAAGGCCAAGACTGATATACCAGAAACTGAACAATTGTCAGATAAAACAATCACAGTAGATACACCAAGCGCTACCACTGACAGTGTATCTGTACAACTGCCAGATAAAACAAACGCAATAGGTATACCAGAAATTACACCAATGGATACTGAAGCTGAATCAAATCACAAGGTAAAGACTTTGGACAATGAAAGTATTGTTAGCAAAGATATTGCTACACCAGCTTTGCATGACCCAGGCCAGGCCATTGACAGTGATACATCTAGCAAAGACAATACCTGCACCAGTCCAAGTCCTAAAACCTTTCTAAAGCCCAGCAGTATGCCCGAATTGGATCGGTCAAAAGTGGAAGTTGTCGAGCACTGTAACGGCTGCCAATACCTGTTTTCTGATCCAACAGTAGATGAAATGATCCTGTATCTACATGCTGTTAAATACACGGGTCCAGACTGGGAATATAGCACAGACCTTCCTGACTGGGCGGCTGATGATTGGCCATCTCTACCCAGCTGA

Transcript

Conbi02328

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000455	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-