| Gene ID | Annotation | Contig | Start | End | Strand |
|---|---|---|---|---|---|
| Clavulariidae_g21828 | SPLICING FACTOR 3B SUBUNIT 4 | ctg000510 | 3618255 | 3632166 | + |
| CDS | |||||
| Clavulariidae_g21828 | |||||
| Transcript |
| Clavulariidae_g21828 |
| Protein |
| Clavulariidae_g21828 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00928 | Adap_comp_sub | Adaptor complexes medium subunit family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR001392 | Family | Clathrin adaptor, mu subunit | Interproscan |
| IPR011012 | Homologous_superfamily | Longin-like domain superfamily | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR018240 | Conserved_site | Clathrin adaptor, mu subunit, conserved site | Interproscan |
| IPR028565 | Domain | Mu homology domain | Interproscan |
| IPR034158 | Domain | SF3B4, RNA recognition motif 1 | Interproscan |
| IPR034159 | Domain | SF3B4, RNA recognition motif 2 | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR036168 | Homologous_superfamily | AP-2 complex subunit mu, C-terminal superfamily | Interproscan |
| IPR043512 | Domain | Mu2, C-terminal domain | Interproscan |
| IPR043532 | Domain | AP-2 complex subunit mu, N-terminal | Interproscan |
| IPR052084 | Family | Spliceosome-associated SF3B4 subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48030 | SPLICING FACTOR 3B SUBUNIT 4 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005686 | Cellular Component | U2 snRNP | Interproscan |
| GO:0005689 | Cellular Component | U12-type spliceosomal complex | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0006886 | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030131 | Cellular Component | clathrin adaptor complex | Interproscan |
| GO:0048026 | Biological Process | positive regulation of mRNA splicing, via spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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