Gene detail

Detailed information of Clavulariidae_g21284 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g21284	DIHYDROOROTASE-RELATED	ctg000488	2636923	2643168	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Clavulariidae_g21284

ATGCCCCTGGAATGCGATCTACTTATTATAAATGGTCTGATTGTTGATCCAGCCAATAGTATTAAGCAAATTCTTCTGCACATAGCTGTAAAAGATGGAGAAATCCTGGATGTTTTTAAACCAGGGGAGAACATTTATGTTGCAAGTGAAACATACGACGCCTCTGGGTGTTACGTCGCGCCTGGGTTAATTGACGTGCATGTGCATTGTTATGAACACGTGACATCACTTGGTATCAATCCTGATGAGACATGCTTGTCATGTGGGGTCACTACTGTTGTTGATGCAGGCAGTGCAGGTCAGTAGGGGGTAGGTAGCTGACCGtccaactaactaaccaaccagATGACGGCCTTACTAACTGAATGACCAAGCGACTGATGGACCACCAACTGACTGAATGACCAAGTGactgatggaccaactgactgactgactgacagACAGACCAACTGactgatggaccaactgactgactgaccaagtgactgatggaccaactgactgactgaccaagtgactgatggaccaactgacTGAATGACCAAGTGactgatggaccaactgacTCAATGACCAAGCGactgatggaccaactgactgactgacaGACCAACCGACTGATGAACCAACTGATTGACTGAGGGATTAACCAACCAACTGACGGACCAACTgactacagtactgcctagaagtaacttaacaatgcggtttgtgcggttagcgtgcgcagtttgtgcggttagcaggtgcggtgtgtgcggttagcgggtgctgtgtgTGTGGTTAGGGGGGGTGCAGTAATCACACCACAACCAGACTAGGCAGCACTGTAACCGAGCGAATGATGGACCAACAGATTAACCAACTGACTTAACAACTGTTGAAGAGACTGACTGATGTTATTTTTCATTTCTTTGCAGGGTGTGGTACATTTCAAGGTCTTCGGAACTTCATCATGGAGAAAAGTCACACCAGGGTTCTGGCTTTTTTGCATATCTCATCACATGGACTGGCTGGGGCTGAGTGAGGGTGTTCTGCAGATGGTAatattatatctgttttatACATCATGTAATATAGCCTTAAAACATTAGCTTTATTTTTCAGCTATTGGTGGAGAGTTGGACTCTCTGAATCATGTACAACTGGATGATTGTGTCAAGTTCatagaagaaaacaaaaatgttattgTTGGAGTCAAGATTAGATTGAGTGAAAGCATTTCAAACAACAGTGCAAATGAACAAGAGGCATATAGGTATAATACACTATACAGGGCTGAGGGGCAGCATACTTTGGATAGCAGGAGATTTCCCTGTGGCCTAGCTAGCTCCCTGTAGTGGAAAGGGACCCTAAAATGCTTTCTAAATCTTAAATTGTCCACCCCTGAAGTGACGTTACCCTAGAGTATATATTGATATAGTGTTTAGTTCTATAGATTTATActattcaatcaatcaatcaatcaatcaactttatttaacaaCTGACTAACAAGTGGCCCTCTTATACTATAACTATATGacatacaattaaaaatactaTATAACATGTAATCATGATAATACTATGAGTTTATAAGTTGAAAAGTCAAGATATTGTAAAAGAATCAATAtcattatacatattaaaaaaatagttaaaaagtTCGTTCTTAAAAGTTTCTACAGATTTTTCGGAAGTTTTTATATGAGGAGGTATAGAGTTCCAGAGTTTACTCGTGGAGACCTGGAAAGACTTTCCCCCCTCCTTGACTCGGCTATAGCGTGGACATACCAAGTTTCTTTGACTGTAGCGGCCTGACGAACGGGTTTGTATGTCTGCATTTGAGGTTagaatatcattaatatatgatGGGCAATTTCCATGAAACCTTTTGTAAGCTAAGACACATTTGTTCAACTTTACTTCGTCATGAAAAGCAAGCCAATTTAGCTGCTTAAACAATGATACGCTGTTTGTTCTTATACCGACATCCAGAATGATGCGGGCAGCACGTTTTTGCAATCGAAGAATTGTTTTCAGGTTTTCCACGGAGCAGTTAGCCCAAACTGTAGCACCATGCATCATGACTTGCTTAAACATGGTGTTGTAGTACAGTTTACGTTGGTCTAAAGGAAGAAACCGTTTTAATTGCCCAGTCGTTGTCCCAATTTCTTAGAAAGTTCATCCACGTGTCTATATTTCATATATAGGAGAGCATTGACAGCATCAAAGGGAACAAAAGTTCCACTAATGGTACACCATACTATTTCTGGTATTCCCTTGGCTAAAGGTAATCATTCACTCAATTCAGTCAATAGCACTAATACTTGTAAAAATATCCTTTTTTCATAATTATTAGATTCTGATGCAAAACTTTCATGTCCTGGCGACCTAAGACCAGGTGACATATACACTCATACATTTCATGGTCATGAAAGCACCATAGCTGATTTTGATCAAAATAGACTGCATCCAGTTGTTCACAAAGCACGTCAAAATGGTGTTTTGTTTGATGTTGGGCATGGACAAGGCTCATTCAGTTGGAAGGTTAGTTGAGATTTAAAGTATTAGGAATTAATTCATACCTATCAATTAATAGTTTAATTAGCAGTAATTAGAAGAAAAATTCATATTTTCAAGGTTGCTGAAATTGCATCACAGGAAGGATTTTACCCAGATCTCATTGGCACTGATCTACACTCGTTAAGCATTAACGGACCAGCGTATGATTTAGCAACAGTCATGTCAAAATTTATCCACCTCGGAATGAGCTTGTATGATGTTGTTGAGGCAGTCACATCACAGGCAGCAACTGCTATTGGCTGGAGTGATCGTATTGGGTCGTTAAGCGTAGGAAAGCTTGCGGATATCACAATCCTAAGGTTAGAAACAGGAGAGTTTCTATTTGAAGACTGTGAGGGTAGCTTCAGGACTTGCAAGGAAGTCATCCAACCTGTTGCTGTTTGGAAAAGTGGTGTGGCATTTCCTATAAAAGTCTGTAGTATCAAACGTGCAAAGTCTGTAAAATAGACACAATTATAATAAAATACTTAAGTTTACTAAGTACTATTGTGATGTTTTATACTTTCATAGCATGAACGTGCGGtaccagtgtgggtagagtataacgaagatagCAGGTACACTTTTCTAGTACTTGTTTAGGAGTTTGGCAAAtaaccagtggcgtagccagcccgccgatttggttccgctatgcaaatttcaacaCAGTacttattcatttctttagaaatttgttgttttcaccgtcaatgaacatgAACGAATTTGCATAgtgggactaaatcggcgggctggctacgctactgcaaATAACCAATCATTTGTTTACACCTCACATTATTTATGGTGaatagctctatcggttctaaactgttactGGTAAGGTTCATCCTTTTGGCCCAACGTTTCTACTGAAGAAACCAAAGTTTTCGGACAAACCTtgcagagtcaaactggaagtaattttctcacatgcgactgcggcgaaattataaccagacaactgcatattacacaGGCTTTTAGTCAGGATGCCAAACTGGCCGCCCAAAAAAATACTGTGGGTGTGGCCACCAATTTTTGTGGCGATGGTAAAAAGGACATGGTGCTTGAAATCAATTTtcagatgctcataattcaGCGTGTTTTCAACAAAAAGGCATAGAAATGAACGCAATAAGCAGCTAACAACTCTCGAAGTACTCCAGAAATACATGATAACAAAGTTTATCACTTAGCAATTAAAGAAAATAGTCCGTCCATGACCGTCTATTAAAAAGTAGAcgtctaaattcaaaagtggcCGTCCATAAGACGGTTGGAAGGCCACCTGGCTAAATGCCTGATATCACATGAATCGAAACCCGATCAGAGGTGAATGAACACATTGGGTTATGAATTAAATTATCgtttcaaactttttgaaaatgtttataGTATAAAGTACCTCCCAAAATTTCTAATGTAGTATCTTTTGTTCTGATTCCAGCGACCAAatagaaaatgtaaatatagaaTCTCCAAGTTCGTCGTGTTCATTGAGTGATTATAGGTGTGTTTTTatgtataatttgttttatgtTCATCCAGAGtaaatttaaaatagttttattaaattaaattaatctGGACTAAATTTAATGTGGATGAACACAAAACAAACTATGAATATACCCGGATTCCAACCCTGTTTTTATTaggaaatattcaaaattttgccATCTCGCCCGATAGAACAGAATGTtaaaaggttttgtagatggaatttcTAGCgaaaaatatacatattttagacctaaccaggtaattgcgaaaaatgcaactgtgTACGCCCCCTCCAGGAGCAATCGAACCTacggctctgcgattccggtgcaccACTCTGCCaattgagctacagagtccagttgtcaagagctaatcACAAGTTCATTtctatatatactagggtgatggCAGTTAGGCAGTGCGTGGTATAAGGGAAATATTGACGCTTGAGCGGTTGTGCTACAATAGTCAAAAGATGTATCAGACATATTACTTGGCAATATTGTAGAGGCATGTCAGTACATAATACAGATATGTGGGGCCTGTGGTGTGGCTCATACTAAGATCATTGTGGTCTTTCTCCATATTTACCGGCATCAACTTCTTTATTTTGAATAGATATTCGTTATTTGCCGTCGTTAACCACAGTGGCACACTTGAAGTCGGTCACTACACTTGCTTTGTAAGGCAGAAAAAAGACCAGGTAACGAAAATATTTTACACGTGCATAAGTTATAGGTTAGTTCTAAAgctatatattattattcatggccaatttccatatcaacaTTCTCAATTTGACACTTGAATTCCTAATTCCAAATCCAATCCTAATACTAACTCTAATCCATGTGACGTCGTTTTGGGATAAGGGACccttcattttttatctggaaCAGGGGGCTGTTGGAAAAAATATTGACGAATGGGGGAGGGGGTACGAAAAAaattatacaatgttttgttggtCTGTTGCAACAATGTCACACTGAAAGCGTAcaaaatggccattctgggcttataaaattcaaaatttaccCCCGAACCCACAGATataaaatgaacggtccctaagtaATATGAAAACTCGTCCAAATGTTTATATCCGTTTCTAGTGGTTCAAATGTGACGACGCGTGGATAACAAAGGCGACGGTTGAGGAAGTACTTATGAGTGAAGGGTAAGAATCAGCAGTTGAGAATCCTTCATACCTATATTTTGGGCCTgcttatatgatcccggctaggcgggacgggacagttcgTAATATAAGCTCTATTAAGTGTTTATATGGTCCCGCCATTATCGGATCTCACCTGGACGGGAGAAGAAATACGCCATATATACAATCTGTTCTCGGCAAATTTTGTTATAATCTAGCTTTTCTGTTTTTGATCACGCAGCAACCCCAGCGCCGCAAGCACAGAAGCCCTGCGTACGAGGTTAATTGCTCAATTAACTGTCAAAGTTttcggatatgatgtcattgggtgaattgtaaattagttttcctttgcttttcttttatgctaaaattcatctaatgacatcatatccggtaactttgacaatgaaaaagttgatcaagatgaggatttttactataaagatatattacatttcttctcagaatgatacaaatattacagaTATACTGTGCAAAAAGAATTTTTGGGGTTTGTGGCACAAATTGCATCATTTGATTTTGGACAATGAACTATAACAAAGAATATTTAGCCAGAGTGTTTTCAGAGTGCGTGTACAATTTGAGTGTAATGAAGTTAAATGAACTGCATGCTCTATTAACAAACTAACTCGTTCCCAGTCGTTCGCTATAACCAGCTAGATAGGAAATATTCAagatttatttgtaaatacgtTTCTAAATCTACATGCAAATCCAAAAATTTATTACATCATTCAGCAATCATAATAATCCTgtccatattttacaaattgcataattgattatttaatattgaatatgcTGAGTGAGgaatttaatacatttttacatGCAGCGTGTGCATggatatttcttgttttaataatGTTTAGAACATGAGTGGCGCTCAGGGTGGTGGGGGAGATCTCGCGGACAGAGCTACTGTCACACTACTGTGGAACCGAACTACTAAAATATACTATGAACTTACCAGGATTGATGACAAAGACAGACAATAG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF01979	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR006680	Domain	Amidohydrolase-related	Interproscan
IPR011059	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR020043	Family	Deacetylase Atu3266-like	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42717	DIHYDROOROTASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0019213	Molecular Function	deacetylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-