Gene detail

Detailed information of Clavulariidae_g21009 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g21009	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	ctg000486	354961	359887	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Clavulariidae_g21009

ATGGTATCTTAGTCTCCTGATGACGGCTCTGAAATAAAATCGTACGTGTATAAATGGAATAGTTGACTAAGATATTCTCTACAACTTCAGACTGAAGGTCGATTGTTGCCTCCGGAGAAAATCAAGTTTGCTTCAAATACAGTCATCGCAAATCAACAAGCAGATTTTGGCAGAGACGCTGTGAAGGAGGCCGTTATTACTCCGGTATGATTTTATGATTATGTGCTTTGGTTATAGGGGTCTTGGCAggacagtggttagtgcatgtgtctttcacttctGTGACTGGGGtgtgattcctgcaatatgcagttgtctgattcaTGGTTCTGCCCACTGTGGGCGGCGccgggcggcagcgcccagcactcaacagtgccgcccggcactcacgccaaagcggactcttccgcccgcacttgaaaggtttcaaatatgcaatagatattttatacaagtaattttgttttttttatcttGGCGAATTTTAtcttagatgaaattcagtactacaatgcgcacaatattagttacgggtgattcggagaaattcAGAGAAATCTCCCAAAccccagaaagacgtctgacgaacggctctaatcacttgtCACTTTGTTCatcgatgtcgcgcttcaagctactctgagaccagtcgatcaagttttaaaagttgtccgCAGGGTGGGAGGGGATCAGGGCTGTAGGTATCCTGCACTCGCATGGTCCTGGACAGAACCCTGCtgatgataattccatctctccgtacttccagtttgactctgccaAATAGCGCAGATTTTCTCCGAGTACTTTGGTTTCTTCCTGTTGTAGCACTAGACCCTGGGCCACTGGCCTTCTTGGATATCAAACAGTGTAAATGAAGTACTTTGTAGACGAAAACAGTCAAAATACCTTAAACACGATccaaccatagttaatagaaattctattaactatgatccAACGATGATCGAGTAATTTTCTGCTTCCCTGGTGTGGAGATCGCAAAGGGtaccagggatggatccagttTGATCCGGGCTTTGATCATGACGCAGGGCGTGGTTGGCGACcaaggaagggtgaatcaccactgaggacccctacagggtcaaggtgttatcttgtcagaaaatgtttttaaaataagatggcctagatggtcaaaaacgcccatcaatggcccgatattatatttttgtttgataaatgtcTTGTCAAATcctaaatttggatttgatacgggaattggcacccctcctgcaccccccttggccaagacTAGGAGGAGTGCACACCCCCATGCACCCCCcgccccagtaaatccatccctgaagGGTACGTCCTCATTACTCTATTATTACATGATTATTCTAGGTGGCTTTGAATACATGGTTATGTGTGTTCACGAAACGTGATCAAAGCAAAGCCTTGGACTTCATTCAGACGATGAAGGAAGTCACACCTGCCATGGGAATTAGGGTAAGAAACATTGTAACATAAATTACTTTGAAAATCTAGGTACCTGGTCTCAACGTCACTTCGTGTTCATTAAGTTCATTAAGTAAGATTGTGGCATCGACTGTGACGTGTTGGTTATGGTGGTGATGACGACGATGGGACACgattgtgatgatggtggtggtgttggTTATGGTGGTGGACTGGTGGTggttgtggtggtggtggttgtggtggtggcgatgataatggtgatggtCGTAGTGTTGATGATTTTGGTGATGACGAGTTTATTTTCTTAGATCTTATTCTTACATGTTATATAAACCATTCAGGTGACAGATCCTGTTGTGCTGGAGACCCGTGATGATCGAACAGAGACGTATCTCCGTACAATACGTGAACATCTAAATCCCAACATACAGATGGTGGTCATTATCTTCCCCACCTCGCGTCATGATCGCTATGCTGCTGTGAAGAAATTATGTTGTGTTGAATGCCCAGTACCATCACAGGTAAATAATGATCCTACAGTACCTCGCCTTGCCTTAGCTTACTTTACCTTACCTTAGCCTACCCTACCTAACCTTTACCTCGGCtaaccttaccttaccttaccttgcCTATATCTTGCCTAACCTAACCTATATCTTGCCTTGCCTTTCCCAATCTATCCACACCTCACCATACCACACCTaaccttaccataccatacataaCCCTACCACGCCAAACCATGTCATGTCATTACCTTACCATATAATTGTATTTCAGGTGATCAATGCTCGTACGATATCGCAGCAAAACAAACTAAGAAGTGTGACTCAAAAGATCGCTCTTCAAATGAACTGCAAGTTAGGAGGTGAACTTTGGGCTTTGGACATTCCACTGGTAGGCTTGATTGTCATTCCATCATTCATGCATAAATCTTCTCGCTCTGATTTCGTCCTGGTCTCGTGTAGACAGAACTTAAAAATGATTTAATTGCCTTACAGAAAAGCTTGATGGTTGTTGGTATCGATGTCTACCATGACAGTCGTGGTGGTCGTTCTGTCGGTGGGTTTGTAGCAAGTACAAACCGTTCCCTGACTCGCTGGTACTCTCGAGTTTGTTTCCAAACTCCAGGGCAGGAACTGGTTGATGGTCTCAAGATGTGTCTCACATCTGCCTTGAAGAAATTTCATGAGGTAATGCCTAATGATAGTATGGTACACATAGACTGAACATACTTCAAAACGACTACGACCTACTCGCGCAAGTTTATTTGCTTACTATGTAGACGAACTACGCAGATAGTTAGTCTTGATAAATGACCTCTTGCCAcatttagggcctgttcatatggggaatagttatctcggttagcgagaaaacatttcgactagccaaataattttgttctgttcacATGGAGAAACGTTATCCCGATTACCGGGTAACGTTTCCGGCTGTGACGTAGCACTGGTGTGACGTGCAAGGCGGGAAAGTTaaaaaaaaactttaaaatacatttaaaaaacaaatatggctgcttTGAACTTACGTAAATTGAAAAGTTGCTGACACGACAGAACGTTTTCCCGCTAAGCGGGAAAGTTCTGGATATGTTTTGTTCATATGGGAAAAACATTATCCCGgtcaccgagatctcgcctgtcaacaagcgagatctcggtacacgggaaaattttcgtctcatatgaacgcagtgtaacttttcatactattttcataacaaggcgagatctcgcttgtaagcttgtcgaaatgttttctcgctaaccgagataacttctccccatatgaacaggcccttagacagagacaaattatcagacgaacCACCTTTTCTTTTTGGTGAACGTGATGATTGACTATTTGTTATTCTTTTTGTATTACCAGGTTAACCATACGTTACCAGAGAAGATCATCGTGTTCCGGgatggtgttggtgatggtCAACTGAATAATGTTGCTATTTATGAAGTACCACAACTGTCAGAATGTTTTGCTCTGGTTGATGAGAGCTACCAACCACAGATGATCATGATTGTTGTCCAGAAGAGAATTAATACCTCTTTCGAGGtatagtggtgatgatggttgtggtgatgatggtggggtggtagtggtggtggtggtagtggtggtgatggtgaacGTGATGATGATTGTCCTGGTGGTGActgtgatggtgatgatggtggtgataatgatggtggtggtgtgaTGGTggtgtgatgatgatggtggtgatggtgataatggGAATAGTGATTGCAGTGGTATATAATGAAGTATGTGCTTTCATATTTCCAGACTCGTGGTTCTCAACATATGTTAGACAATCCTTGTCCAGGCACAGTCCTTGATGACACTGTCACAAGAAAGGACTGGTAAGTCACCCTGAGGAACATGCTTCTTTAAAACATGGTGTTGTTTCACCTCTGTGATCTTGGTTCGACTCTGGCattatgcagttgtctgattatagtttcacctcagtcacatgtaagaaagagtacttccagtttgactctaccaaacaccgcaggtttactccgggtactctggtttcctcctgtagtaacactggatcaataagagatgacccttactggacctctaggtagaacagttcagaactgatagagctatccagtataaatagagttagtttagtttaggtttcctcatgtagtaacactggagcaataaatAAGGACTGGCCCTTACTGATCCTCTAGGGAGAGTTTCTATTTAACTCAGACAATAAATTGAATGTAATATTATGCTATTTCAGGTACGATTTTTTCCTGGTCAGTCAACATGTCCGTCAAGGAACTGTCACACCGAGTCACTATATCGTTGTTCACAACTCTTCATCACTGAAACCAGATCATGTTCAAAGGTATATACAGAATagagtataaatgaagttagtttagttcctCTTGTAGTGaaactggatcaataaggaatggcttttactagacctctagagagaacagtttagaactgatagagctatccagtataaataaagttagtttagttcaggttttctcctgtagtgaCAATGGATTGTTTCCTTCTCTAGATTGTCGTACAAGTTGACACATCTGCATTATAATTGGCCTGGAACTGTCCGTGTTCCCGCACCATGTCAGGTAAGATATATACGTTATAACTGTCAAATCCCGCTGTGAATCAGCGTAGTTAGGCTAATATGCTGAGAGATTCGTACCCAAACTGCGCTTATGATTTCCCGAGTACAACTCCCCCCTTGGCGCTTGAAAAAAAAATCGTACTACAATCTTTAATACAGTTTTATTTCCGGATCAGTGACTTACCTTTCCATTTTCTTGTGTTCATATAGTACGCTCACAAGCTCGCATATCTAGTTGGCACCTCTATCCACAAGGATCCAGCGTTAGCCCTCAGTGATCGACTATTCTATTTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02171	Piwi	Piwi domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003165	Domain	Piwi domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0031047	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0034584	Molecular Function	piRNA binding	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-