Detailed information of Clavulariidae_g1945 in Trachythela sp. YZ-2020 Gene info
Gene IDAnnotationContigStartEndStrand
Clavulariidae_g1945ATP-DEPENDENT RNA AND DNA HELICASEctg00004629347402971362-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF07915PRKCSHGlucosidase II beta subunit-like proteinFamilyInterproscan
PF08148DSHCTDSHCT (NUC185) domainDomainInterproscan
PF14778ODR4-likeOdorant response abnormal 4-likeFamilyInterproscan
PF17911Ski2_NSki2 N-terminal regionDomainInterproscan
PF21408MTR4-like_stalkExosome RNA helicase MTR4-like, stalkDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR009011Homologous_superfamilyMannose-6-phosphate receptor binding domain superfamilyInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR012913DomainProtein OS9-like domainInterproscan
IPR012961DomainATP-dependent RNA helicase Ski2/MTR4, C-terminalInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR029454FamilyODR-4-likeInterproscan
IPR040801DomainSki2, N-terminal domainInterproscan
IPR044865DomainMRH domainInterproscan
IPR048392DomainExosome RNA helicase MTR4-like, stalkInterproscan
IPR050699FamilyRNA/DNA HelicaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12131ATP-DEPENDENT RNA AND DNA HELICASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0055087Cellular ComponentSki complexInterproscan
GO:0070478Biological Processnuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decayInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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TOP