Gene detail

Detailed information of Clavulariidae_g1827 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g1827	PROTEIN B, PUTATIVE-RELATED-RELATED	ctg000046	899742	903830	-

Gene Structure

More details in Jbrowse Sequence

CDS

Clavulariidae_g1827

ATGTGCATAACCGAAGCACCAGCAGCACTGTGCATTCAGCTGATGCGGTTTTCAGtaaaatccataaagcaacAACACCACATCCAATATCAAGAGCAACTCACTTTGGATACCTCCTTGAAGGATTCAAACGGAGTATCACTAAAACAGGAATCAGCCAAAGCCTTATACTCACTTGCAGGGGTTGTAGTGCATGAAGGGAATACCATACAAGGAGGTCATTATGTTGCATATGTGAAGAAATCTGGCCAATGGTACCGCACTGATGATCTTAGGGTAACCAAGGTATCGCCATTTGAAGCTACACACCAACAAGCATATCTactattttatcaaaaaattcAGAACATTGAAAAGCCTAAAACCTCAGAAATTCAAAGCATTGAAACGCCTTGCACATATCGGCAATCTAAAAGAAGCCGCCTGTCATTGAAGAAAGCCTCGATAAAACGTCCTGTTGCAATCCATGCTTTGCCTTCAAACTATTACGTAAATGAAAACCAATGTCCTCTACCAACAAAACCACGGGTAGTCCGATCATCAGAAGGTGTCCGTGTGTCATACAAAAAGATTAGCGATAATGAGAAAGAAAAGGCCGAAATTCTCGCACAAAAAGGTCTAAATGCAAGAAAGCATCCACGATTGGCTGGTTGGACACCAGATGATATGTTATGTCTTCTTCCAAACCAGAGTGGTAACGGTTCATGGTTATCAAACTTTGTAATTAACCATATTCTGTTGATGTTGGAGGAGCATGCAAGGAAAATTGGCAATAAAGTCAAAACAATAAATTGCGATGTACTCAACAACATGACAAAGCCGTGCAaagaattatttttacaaaacaaatacCACACACTTTACCCTAATGTTCTTGATTGCGACGTTCTTTTAAGCTTATTTAATCAAGGTCAACACTGGACGTTATTGTCAGTGTTCCCTGGGAAGAAGAGGATGGTATTTCTTGATTCACTATTTGGAGGATCAGCAGGTGAAACAGCATTTTTAAGGTGCTGCAATTTTCTCACTTGTGCAACAGAAGAGAAGATTGATTGGTCAGAATGGCGGTTCCTGATAATACCGGAAGAGCACATACCTCAGCAGTTAAATTTCAATGACTGTGGAATGTTCTCTATCAAATGGGCAGAGCATATTGCATTTGGCATCCCGCTGGACTTTCAGCAGGAAAATATTGAAGATTTTCGGTACTCTACAATCTTAAGTTTGTTTGCTCAGAAGGTGGAAGTTGATTACCAGTTTTGTAAAATTTCAGAAGCTGCAAACCCAAAGGAAAATACAAAGTGTACGACagagaaaattgaacaaaacgTAACATTAGAAATGACTGACGAAAAAGTCTACAAAACACAGAATGATGATATTGATGATATTGATGATACTATGATGAACCCACACTCATCAAACCCTCATCTCCTGACGGACCACAGTTACGCCAAAATGAGAGATGACAGTCAGTCTAGCATTTCTCACGAGAAGTCATTCGCCCTTCCAGCTGAAGTTGCTGCTATCCTGCCACCTACGTACAAATACAACATAGTAAAAATGGAACAAATAGAAACAGAATGTTTTATAGGTTCACCCAAAAATGCTTTCATCGTTTCATTTACAATAGCCAATGTTACCAACAAAGATGATGTGTTAAAATGGAAGAAAGCATTTCTTGAGTCATCCAATGTAAGGTACAACACAAGGCAAGGAACAAAAAGGAAGGGAAAAACCGTCTCGTTCGCACAATGGTACATCTGCCAATGTGAAAGAAAGAAACTGACTAAAAAACAAGAAGAAGCTAAAGCACATGTACAGGAAAAAAGAAACAAAGCCATTGGAAATAGAAATAAGGATCAAAAAGAACTCCATTTACTTTCAAGTCTTCGAGATAAGAAGACCAATTGTCCCAGCAAAATGTCAATAAGACTATTTACCAAAAGGTCTGTTAACGAGATGTGCGAGGTCAAGTTATTCTGGAATCATAATCACAGCACGGAATGTTATCATTTGAAAACCTTTCATGAAATGCTTCCAGCAACAAAACAGATTTTTgaggaatattttgaaaatgggtTATCCCCAAGTGAAGCAATCCAGCACCATGAAGCAATATTACTAGAAGATCCAGTGAGTGTGGTAAAAGTTGCTGATAGACGTTATTGCCCCTCGCTTACAGATGTGAGAAACCTATTCAACAACTGGAGAGACAGAGTGAAAGGGCCAAGCAATGGGaaagaaatgtttgaaaaacttAAGGAACAAATAGAAGACTACAACAAGAGAAACGGCATTCATGGAGGGAGATGTTCCCTTCAGGAGTACACATGTGGAAAGGAGGAAAAACCACTGATTTTAACAATCGTGACACCACTCATGTCAAGGGTTCATAGTCTCCCTCAAGCATCGGAGATGGCATTTCTTGATGCCTCACAAAGCTTAGACAGATACAATAATCGAGTGTTCTTCCTTTGTACACACCATCCTAGTGGTTCACTACCATTAGCTGTATGGGTTTCCTCGGATGGATCATTGGATACTAATAGCAAAAGCATGGCTATGCTGAAATCAGTTTTACCTAGACATGCCTTTGGTGGGAAAGGACCGAATGTTGGCCCAAAATTGTTTATGACAGATGATGATGCAGCAGAAAAGGGGGCTCTACAAGAGCAATGGCCTGGAAGTAAACAGTTGCTTTGTATTTTCCATTTCTTACAGGCAATGTGGAGGTGGTTGTGGGACAGCAAGCATGAAATTAAAAAAGACGACAGAAAGCATTTGATGTCATATATGCAAAATATGGTCTTTGCGAAAGGCGAAGACGAATTTGAGGATATATATCTGAAACTGACAATGGACAATGTTGCCAATGGATATCCAAACTTTTTGGAACACGTTAAAAATTGCTATGAAAGACGAGAAGAATGGTCCCTTTGCCACCGGAAAGACTTACAAACAAGAGGGAATAATACTGACAATTACACAGAATCGcttatttttgttttcaaatgtaCTATTCTTCATCGGATCAGGGCATACAATCTACTTGAATTGTTTAAATTCATAACAGAGGATTTAGAAAAGCATTTTCAGAGAAAACTTTTGGCACTTGCATTTGGGAAACCACAGAACTTGCATATTCTTCCCCGTTGTTTTGCCAAAACAGCATGTACAGTAAATCTAGATGCTATAattcaagatgaaaaaaatcCTTTTCAGTACCACGTCCCTAGCAGAAAAGAGCctgatactatatatatagttgattgCTCTACAGGGATCTGCACATGTCCTGCTGGAAATAACGGTACAGCTTGTCCACACCAGGCTGCTGTTGTGTTGAAGTATGGTGCATCAAACCCAAATTTTGTTCCGCAAAATCATcatgaaaaatacaatcttGCTGTAACAGCTGTTGGTGAGCATCCAGACCTTCAAACTGAAAAATTTGTCAATATTCATCAGAAAGAGCTTGAAAAAAAGCCAGGATATTCATTATCCTACCCTATACCTTCCTGTGATGACATATCTAGTGACAAACTGCAGACAACATCATCCCAAATAAAAGATATTTGTGACAGCATTGCTTCTACAAAGTGTGATACAACTGGCTATGCAGAGGAGAAAGATTCTAATCTGGAAGAAATAGTCAAGCTCCATAAACAAGTTACAGGTGATATTGAGATGAGATTAAGAAATGGGGATGCAAGCTTCAAGCAATGTTACATGAAATATCTTCATCAATACAGAAAGATAGTCCTAAAGTCACGTGGCCCCTCATCGGGAAATTGCCTCGCCAGTGCTTATGCTGATTTTGGAAAAGATCGAAATGGAAAGTTACTTCCAGTACTGCATAGGTCAAATAAAAGGATCCATGTTCAACCAACAGCAATTGCAAGACGAAAGTCTGATGTTAAATCAACAACTGCTCAGCCTCCTGGCCCCAAGCCAGCACGACAATTAAAGAGAACGATAAAAGACATTAATTGTATTCCTGATAACAACATATcacggaaaaaaaggaaaagaaaCTTATCACTAAATGTCCGTAGAAACCAACCAAATGCTGGACACACAAGATAG

Transcript

Clavulariidae_g1827

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|ULP\|ULP
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35385	PROTEIN B, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-