Detailed information of Clavulariidae_g18122 in Trachythela sp. YZ-2020 Gene info
Gene IDAnnotationContigStartEndStrand
Clavulariidae_g18122CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDctg00037090341489068253+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF13854Kelch_5Kelch motifRepeatInterproscan
PF13907CHD1-like_CChromodomain-helicase-DNA-binding protein 1-like, C-terminalDomainInterproscan
PF18375CDH1_2_SANT_HL1CDH1/2 SANT-Helical linker 1DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000330DomainSNF2, N-terminalInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR011043Homologous_superfamilyGalactose oxidase/kelch, beta-propellerInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR023779Conserved_siteChromo domain, conserved siteInterproscan
IPR023780DomainChromo domainInterproscan
IPR025260DomainChromodomain-helicase-DNA-binding protein 1-like, C-terminal domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR040793DomainCDH1/2, SANT-Helical linker 1Interproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45623CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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