Gene detail

Detailed information of Clavulariidae_g15899 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g15899	DEOXYRIBONUCLEASE TATDN2-RELATED	ctg000308	2424021	2427510	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Clavulariidae_g15899

ATGGATGGAATAAAGTGTTTTTCTTGCGGAAAAGAAGGGCATATAAAGAAAGAATGCCCGGAAATTAAAGCTAGGAAACTTGCGAAGATCAAGTGTTTTAATTGTGGACGACATGGCCATATTGCCAGAGAGTGTAAAGAAGAAAATTCTGTACCACCCCATTTGGCGTCAACTTCGACAATGTCTATGCCAACTGTAAACGGATATTCACATTTTGATACAAATGAAGTCCAAATACCTGTATCTACTGTCAAATACATTGATTCTCACTGTCATTTGAACTACGTGTTTGATAAAAATCGACATCGAGAagattttaatagttttaaaaaCAAGTTCAATTTTCCAGAAAATTTTAGTGGTTGTATTACAAGTTTCTGTGATCCAGCCTCGTTTTCAAGCCTAGGAATTTGTGATGAGTTGATAGAACATGATCAAGTTTGGGCTGCGTTCGGCTTTCATCCGCACAATGCCAGGTATTATAATGATCTTTTGGAGTACAAACTCTGTGAACGACTGCAGCATCCGAAAGCAATCGCCTTGGGGGAAATTGGGCTTGATTATTCCGTCCGAATTCAGTCTGAAGTCGAAGTGCAGAAGGAAGTCTTTCTAAAGCAGGTTAAACTCGCTGAAGTTTGGAAAAAACCGCTTGTTATACACTGCCGTGAAGCAGAGAATGATGTTTTTGACATACTTTCGTCAAATTTACCCAAAGATTGGAGAATTCATCTGCATTGTTACACTGGAAGCTATGAGGTTGCGACAAAGTTTCTTAACCATTTTCCTAATCTGTTCCTGGGGGTCAGTGGTGTCGTCACTTTCTCAAAGGCGTCGCAAGTTCATGGTGTTGTTTATGATGCTCCTATTGAGAGAATCATTCTTGAAACGGATGCCCCATACCTTGTACCGAGCTGTCTTGGGAAAGATACAAGATGGAGTCATCCCGGAATGATACCTCTTATTGCCGAAGAAGTAGCCAAGATTAAGAACATGCATTTGGATCAAGTCCTTGAGCATGCTTTGGCAAACACGAAAAGTGTTTATGgtatataaaaatgaataataGCTATAATATAGCTTTGAACTAAATATCTTTCATGTGCAGAACCTAATGTAAATGATCTAAATTCATTGTTTGAGCACATTTGCATCAGGTTTGGCACATGAAAGGTGCAACATTTGAACTAGGCCTTATATTGTAAGTATTGATGGTTTTATGCATATATTTACATCAGTAAGGGGAACTCTACTGTCATGACTGATGTATATTTTATTCATCAGATAGTTTTATAGACTTTATAGCTTATTACTATTTCAAATGTATTTTAACTGTTTTTAATTCAATAGTTACAATGTATTGTTTTTAAGCTATTTAGTATTTACAGTATATTCTTCAATAGATTTggtagtaaatatataaatatttgttaaaagtGTTGTGTAATTTGACATGAAACTTCAACGCTTATCAGGTGCATTTGACAGATTTCCGTAAAGTTTCACAACATTGTTtctgcgactgttcatcgtTAGCTGCAAACGACGGTAATGACGAAGTTACAATATTGGTATCTAACATAACGTACCTGGTATTTGCAAACCGCATACGTCCATCACTGCAGGCTCGAATATTTGCTTGATCAATGATCACATGACtttcaatatattttctgtCTGAACCGAATTTTGGTTTCTTGCAAAATCTTGCGAAGATGATGTCTTTTTTTCAACGCATTTTAGACTGGTTTCGCAGTCTATTTTGGAAAGAAGAGATGGAGTTAACCTTAGTCGGTCTCCAGTACTCTGGAAAGACGACATTTGTCAACGTGATTGCGGTATGAATATTGCTAAAAtgttttggttttggttttaaaatacCAGTTTAAACATGTAGCTAGTTGTGCATTGTTGTATTTAATGATGTTCTTTTGCAGTCAGGGCAATATAACGAAGATATGATACCGACTGTTGGGTTTAATATGAGAAAGATATCAAAAGGCAATGTTACCATAAAGGTATTTtaggctctttctcgatatatatATGAGCAACTGAAATAGgcattattagggttaggtagGGGGTATAAAGATTAGGCAACTACACAAGTATATAAAACTAAGGGGTACATGCAGGATTTAAACACTAgaaaaaaactaaaatataattGGTGTAATTATATATCCAAGTGTGTTTTTGTGCACCAAAATATCATCTCGATATGTTggagagtgctcaataccattAACATAGATCAAATAGTATTAATTTGCTACCATTGGTTTCACAATGATGGTGCCAAGCATGAAACTGATGGTAGTGACCAGGATACATAATTCCATTTAGGGGTCCTGACTTGTTCTGTGATTGCTTTAATCCTTCCCCCGCTCCCCTATCGTGGATCAGTCAATGTCTTTTGCACACAAAAGTCTGTGTTCATCCAagttattttgtaatcacagatTCTTTGCTACCCACTCCCCATCCTGGAACAAGTGTGTGATAGCAAGACAAAATTGTCTATGGCCCCTAATTATATAAAATGAAATTTAAAGTTAAAATTGTCAATTGCTTTATTTCCCATCCAGATGTatccaaacaaaataaaaacaggaaaatatattttttaggtTTGGGACATCGGTGGGCAACCTCGTTTTAGAAGTATGTGGGAGAGATACTGTCGTGGCGTCAACTGTATTGTGTAAGTTGAAAGAAGATTGGCACATAACTTAGGTCCATTTCAAACACTGTTTCAGATGCTGTTTCAGTCATGCGCCAAACCTAATGGACGAATTAGGTGTGCCAGAAGAGCAACATATGAATCAGCTAGGTGCAGCAGAATTTAGAGCAACAAAAGTTCAGCTGAAATTTGTCACCTGAATCAGGACATATATGTAtattagagctgctcccattgGGAGATTTTTGTAATCGATTAATTGCTGTCAACAATCAATTAATATTGATTAAttgtattgaataaattaaatcatcaCATGCCCAAAATGTGACTTAATTAACAAGAAAGTGACATCTCCAAAAGTAAACATCACAAAAAAATTTCCCCACTTGACCGTTTTTTTTTGCAATGAGAGTGTCAGAATGAAAGTTTAGGCAAATATGCTATGCATGGTTATTTTCAATTATCtaattattgttaaaaataatcaattgccaaaaaataatcgattaatTGAGAGCAGCTCTAATGTATATTctaaaataattaataactGGACAAGATTGAGTGAAGTTTTGTGATTTGTCATTTCTAAGTAGTACAAATATTATCCATACGAGCTTGCACATTTTAATGTTGCCTGCAAATTCCTAAAATATGTCAATAATTTCTGTTTGTAGATATATGGTTGATGCTGCTGACCATGATAAATTTGATGCTTCAAAAAATGAACTGCACAATTTACTTGATAAGCCACAGTTATCAGGAATTCCTGTAAAAAAACCTATTCTTATAGATAGTTTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025	Arf	ADP-ribosylation factor family	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF01026	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001130	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR006689	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR018228	Conserved_site	Deoxyribonuclease, TatD-related, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46363	DEOXYRIBONUCLEASE TATDN2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-