Detailed information of Clavulariidae_g15629 in Trachythela sp. YZ-2020 Gene info
Gene IDAnnotationContigStartEndStrand
Clavulariidae_g15629NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2ctg00030723043702339349+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors FamilyZBTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|BTB

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00651BTBBTB/POZ domainDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF02854MIF4GMIF4G domainRepeatInterproscan
PF04050Upf2Up-frameshift suppressor 2 RepeatInterproscan
PF04300FBAF-box associated regionFamilyInterproscan
PF07707BACKBTB And C-terminal KelchDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000210DomainBTB/POZ domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR003890DomainMIF4G-like, type 3Interproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR007193DomainUp-frameshift suppressor 2, C-terminalInterproscan
IPR007397DomainF-box associated (FBA) domainInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR039762FamilyNonsense-mediated mRNA decay protein Nmd2/UPF2Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR12839NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0035145Cellular Componentexon-exon junction complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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