Gene detail

Detailed information of Clavulariidae_g13882 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g13882	NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED	ctg000283	2128662	2132270	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Clavulariidae_g13882

ATGGATTCTCGTATCAATATAGCATTGTTCGCTCTCGGTCGTGCTGGCAAAATTCACTTCAAAAACCTCCTTAATAACCTACGTGTCGATCTGAAGTACATCGTCGAAGAATACCCCAGCGAAGCAGAAAAATTCGTGGCAGACCATCGCCTAAATACTAAAGTTGTTCACACAAGCGATATCAAAACAGTTCTGAGCGATGTCTCGCTTCATGCTTGTGTTATCGCGACACCAACACAGACGCACGAAGCGTTGGTACTTGCCAGTTTAGAAGCGGGTAAAGCCGTGTTCTGTGAGAAGCCTTTGGCGAACAGTGTCGAAGCGATTGGTATGAAAATATCTAATGTCACGCAGTTGGGGTTTGTAGAAGAGATAGTTTAAACAGAATATGCATTATAAGACTAGGTAGAACGCCATCAACGTTCGGTGACTGGGGAATATATAATACATACGGTATTTATACAGTATTGCGAAACATGCAACGAGTTAATCCTGCTTtacacgagagctcttggctgaggcAACGTGATCTCGCGCGGTTTGAAACagtttttaaataattatgttcatTCTGcttttatacaaatatatataattatatacacgtgtaggtttaggtctacgaaacgcagagtgctcgacaacatatagttagagcaaattatagattttcgcttacctcaaaactggtctgcaacaggttgTTTCATGTTCTTTTACAggactgcctgatgattcttttacagatgaaacagcctgctgcagaccagttttgaggtaagcgaaaatctatacaTATCTATATagaaaaggtttgtttatacCGATCCGAAAGTTGATCTGATCATGCACCATGGCGTCATTCGCTTGACTAAACCTCGAGCTGTTTgactaaaaatattttgaactaCATTTGTACAGTTGTACACGAGAGCTCTTGTCTgatcttggctgagctcaccgaAAAATCGTAGGTTACCAAATTACTCTCATGAATATCAAAGATGTTAGATCTTTGTCCCGCGGCCTCACGAGGTGAAATCCTCAGCAAAAATTATCGGGACGAGTCTGGTCTGGCATAATATTTTGATTGTTGAATATTTCGCAATTTTACTTCGCCCACCTTGATATCAGATATTATCATCGATATCAAATGACACATACTCGATTTGAATAAGTTAAAATTTAAATGACAATCAATTTGGTTTTTCACACCTCTTAACCTCCCCAACGCCTTTATTTGCAAGATTTGCAAATATCGGTTTGGTGGAAAGTACGGATTGCGGAATATGGATTGCGGAATATGGATTGCGACTCGCGTTGGATGACTTCCAAACTTTCGGTTTGCTGAACGTGTTGCACACAGTTAAATCCTTATACGTTCGCGGCAAGACAATACATGTCCTTTataccccgttaatacggccagaTTTTTAAAGCCCACCCAATTTTTATGATCCAGTATATTATTTTTTgcaatagaccattttgtagcgTCGACTGGCATCCAAATAACGCGTTccgcgtcgggataaaattgtagttgaatGTATAACATGttgctgagactggaagaactaaattatgcatatcgaagtatttaactgttcaatcatcatttgtgttttacatatagccacaatacaACGTACTGCAAtatgatttgaatatgcaaaactTTAACGTTGGTCAAAGAACATTTAGTTTTCGCAGGGTTGACTCACTTTTAATTGCACAAAAGATATTCTCTTAAGAGGACAAAGTATGTTAGTACAAAATGGCATTGAATGGATGATTGATCAGTTGattactttgatatgcatattttaaatcttgcGGACTTCGCAAGTTACGATTCAAGTGCAATTTTAtctcgacgcagaacgcgtcattgcgatgcgcagtcgacattacGAATTGGTCTATTGAATCAGCTGTATACAGTCAACGCTCGTTATAGCGGACACCCTGGGGACCGTCATTTAGCGTTCGTAATAGCGAGAGTCCGCTATAGCGGGGTGCCGGGTGCCCCTCGAGATTCATTAGCATTCTcgtgttttgataccgtgatcaaacactcaaactcgtttttgaaatagtacttctcaaactcattaataattcattagcaatttactcaatcagacagctccattccgtcacgtgaatgggctttcatacctggtaaaacactgcatcaaacactagtgtttgataatcaaacactagtgtttcattcatcgtaatttaacaaaaaatcaaTGCGATTGTCCTAAAACGGTTCATTGCCTTTCGTTTTGAGAAGAAAATATCACAATTTTAGGTTGTAAAATGTCACTACAATGTATTACTCCTTTTTGTTTATAATGTCCAGTTTATTTCAACTTCTAGCTGCAGAGGTTTACTGTGATACATGAGTGCAAAGTACAAGTCAAAGTAAAATGCCTCGAAAGTAGTGTAAATAAAGCGGGAAAAGGTCGGAGCAttctatatttttctgtttgtcAGTTTTGTCGACAGAAATGATGACGCACGGAATCATCAAAGTACTTCCGCTGATAAATAGAAACAGTAAAATATGTCACTGTATAAATGAAAAAGTCATTCACTTTTGTATTGTGTCCAGAGAAAAATACGTCCAAAATATCCGTTGTAACGAGAGTAgaacaataaaaatgtttgttgGGGACCACATGAAGTGTCCGCAATGCCGTAATAGCGAGAGTCCGTAATAGCGAGagttatttcaatacatttcttaGTAGTTTCGGCCGGGGATTTACAAACTGTCCTTAATAGCGGGGTGTCCGTAATAGCGAGGTGTCCGCAAGGCGAGAGCTGACTGTATATGCATATAAGTTATTTTGTATTGTCTAAAAAGTCTTATATTGTTCATTCAGGTTAATTATAAAATCTCTTATAGCGAAATGTTACGATGAGGCGAAGAAAAGAAAGCTCCCATTGATTTGCAGTTTCAACCGTCGTTTTGATCCTGGACTTCGAGAGATATACACCCGAACAAAATCTGGCGAAGTGGGGCCAGTTCAAATGGCCAAAATAACAAGTCGAGATTCACCGTTGCCGCCAATTGACTACCTCAAAATATCGAACGGAATTTACCACGACTGCGCAGTTCACGACCTCGACGTGCTGACTTGGATCTTCGGGGAGAGACCGCTTAGCGTATACACAACGGCTCATAGCTTTATTAAAGAAATAAGGGAAATGAACGACGTGGACACATTGGCGATTGTTTTGAAATTCCCCAGTGGCGGGATAGGTTTAGTTGATATATCTAGGTTTGCTTGCTTTGGGTACGACCAAAGATTTGAGGTCTTTGGTGAAAAAGGCATGCTAGTTCAACATAACTATAAGCCTTCAAATGTTGAATTTTCCGGCCAGGCGGGGTCATCGACCGGGCGAATATATCACTCATTCCCGGAAAGATATGCGGAATCGTACATTAAGGCTTTAGACCATTTCCTAGATGTAATTCAAGGAAAATGTTCCGCGGTAATTACCAAGGAATCTACCCTACTTGCAAGCGAAATTATCGAGGCCTGCGAGCAGTCACTTAAAACGGGGCAAGCGGTTATGTTACCTCGATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01408	GFO_IDH_MocA	Oxidoreductase family, NAD-binding Rossmann fold	Family	Interproscan
PF02894	GFO_IDH_MocA_C	Oxidoreductase family, C-terminal alpha/beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000683	Domain	Gfo/Idh/MocA-like oxidoreductase, N-terminal	Interproscan
IPR004104	Domain	Gfo/Idh/MocA-like oxidoreductase, C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42840	NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006740	Biological Process	NADPH regeneration	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-