Detailed information of Clavulariidae_g13584 in Trachythela sp. YZ-2020 Gene info
Gene IDAnnotationContigStartEndStrand
Clavulariidae_g13584FACT COMPLEX SUBUNIT SSRP1ctg0002815340968572+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Transcription Factors FamilyHMG

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF03531SSrecogStructure-specific recognition protein (SSRP1)DomainInterproscan
PF04258Peptidase_A22BSignal peptide peptidaseFamilyInterproscan
PF08512Rttp106-like_middleHistone chaperone Rttp106-like, middle domainDomainInterproscan
PF17292POB3_NPOB3-like N-terminal PH domainDomainInterproscan
PF21103PH1_SSRP1-likeSSRP1 PH domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000969FamilyFACT complex subunit SSRP1/POB3Interproscan
IPR006639FamilyPresenilin/signal peptide peptidaseInterproscan
IPR007369FamilyPeptidase A22B, signal peptide peptidaseInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR013719DomainHistone chaperone RTT106/FACT complex subunit SPT16-like, middle domainInterproscan
IPR024954DomainSSRP1, dimerization domainInterproscan
IPR035417DomainFACT complex subunit SSRP1/POB3, N-terminal PH domainInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR038167Homologous_superfamilySSRP1 domain superfamilyInterproscan
IPR048993DomainFACT complex subunit SSRP1-like, first PH domainInterproscan
IPR050454FamilyRTT106/SSRP1 Histone Chaperone/FACT ComplexInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45849FACT COMPLEX SUBUNIT SSRP1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0035101Cellular ComponentFACT complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0042500Molecular Functionaspartic endopeptidase activity, intramembrane cleavingInterproscan
GO:1902275Biological Processregulation of chromatin organizationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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