Gene detail

Detailed information of Clavulariidae_g12683 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g12683	ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2	ctg000256	832275	834574	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Clavulariidae_g12683

ATGTTTACGAAAAACGAAGCATATAAGATTTTCAATTATTTGGAAAAGGATATTGTTTATGAAAGTAACAGCAAAGTCCAGGTTTTTGGAAAATGGCACAATGTGCCAAGAAAGCAAGTCTCGTATGGTGATGAGGGTTTGAAGTATAAATTCTCAGGAACGACCGTTTCAGCTAAGCCATGGCCCCCATTCCTTAAGGAGCTTCGGGATACATTAGCAACCAAGATTggaactaattttaattttgtgctTGTTAATCGTTACAAAGATGGTAATGACCACATTGGTGAACACAAGGATGATGAACGTGAACTCGTTAGTAGAAGTTCAATAGCCTCACTTTCATTCGGTGAAGCAAGAGATTTTGTTTTCAGACATCAGGATTCCAGAGGGTCGAAGGGTGTAAGAAAAATCGGGCCAGTCAAATTGAACCTACAATCAGGCAGCctattattaatgaattatcCGACCAATTCATATTGGTATCACTCGCTTCCTGTCCGCAAACGATGTCTGGGACCTCGGATAAACCTCACTTTCAGACAAATGCATCGTTAAAAGTTTAGAGTTTATAAATACAATAGTGTAATAACTTGTTAATTCTATACAAATTGTGAACTCATTTTGTAATAGATTTGCTCAAACTTTACTTGATAGCCCATGCATGCGTTCTCTATCGTTCTCCATGGAATCTCTGGGGGGGGCATTAAAATAGTACGTCAGGGGGGAGAGCATTAAAATAGTACGTCAGGGGGGGGGCAGCCTCGTTCTCAAGCTATAAATGCGCCTGCGAGCAAGCTGTTTTGTCAGCGGTACATATGTTGTTTGTAACGCGTATGGTTTAGCGCAGTAAAACATGGCTGCACAATGTCTAAAGAAAATGCTGAAAACTTGCGAGAAATTGCCCTACAACTTCTAAATGAAATTGCTAAGGAAAGCAAACATAGTCAGGGAGGTAAGCTATTATTTAAAAGAGATTTCACTCAGAATTACTGTGTTATTGACTTGCATGTTTacggtttaaattttaaaatacggTTCCATGAATATGAATTATGACGTTTATATCTAACCAgatgttttctatattttagaaaaatttgTACCGAGTGATGAATTGTTATCAGCgtaagttaattaattcattgACATTAGTTCAAATTACGAAAACATAAATCAATCCAAAATCTTAAACTTCATTCTTATCTTATTTTAGGTTACGTGTTGTCTTTCCACAAACGTTGCAACACGCTCTAAATTTAGTTGACCAAAATTGTGTCGCTAAAGTTGTGTCTACAAGCGGCCGGGAGTTATTTCAGGTGAATAAGTGGTTCACTGTTAGTTGTATCTTGTAGACTAGCTATCACCACCACCAtgaccaccaccatcatcaccattatcaccaccacTACAATCATAATCATCATAATAATCACCtgccatcatcatcatcatcacaaccactacgatcatcaccaccaccatatCACCAATCTCATTATACTTTTTACTCTTACAACCATTTTCACCCAGGTAAAAGGCTCTTCAGGAAAGATTTACAACTGTCTTATGTCATCAGAGTTCTGTACATGTCCTTCTTATACATATTATGGTAGGTATCCATCCAGTATAATCTTATGTAGTCAGACAAATTGGCATAAAATTATACTACTAGACCCTGTCTGATCAAGTACAGTACCAGTATAACACTGAAGCAAAAATAAAGGTCCTATTTTGTAAACCAGTGTTTTTTACTTGTACTTTTTGTAGTCTTGATGAAAGAGGAGGTACTAATGGTAAGCCTTGTATGTTTTGCTTTCAAGCCAGTATGTCCAGATTCATTTGAATTTTGCCCACCATTACATTTCAAGTTATTTCACTTGtgtactggggccggttgttcaaaagccggttagcctaaccctgggttgacgaaaatcttcaaatcaaatcacccaacagcttgtttataaagttgaatatgtttttccagaaatcttttttGGATCAATAGcagttttgttttctaaagttttgaaatgaacggCCATggagaaatacataacccaaaacagtgggttaaaatttaacccagggttagtgctaatcgagctttgaacaaccggcccctgtataTTAAGATTATTATTTACTGTAAAGCCAGTAGATCCATTGGTTGTTTGTTCTTCTAGTGTAAACACATATTGGCAGTTTATATTGCTCAGAATCTTGAGACTTTGGATGAAAGAAAAGTAAGCGATGAAGATTTTGTCAAGATCTTGACTGATGTGAATGATTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04434	SWIM	SWIM zinc finger	Domain	Interproscan
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR027450	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan
IPR032852	Family	DNA oxidative demethylase ALKBH2	Interproscan
IPR037151	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31573	ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006307	Biological Process	DNA alkylation repair	Interproscan
GO:0008198	Molecular Function	ferrous iron binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0035511	Biological Process	obsolete oxidative DNA demethylation	Interproscan
GO:0043734	Molecular Function	obsolete DNA-N1-methyladenine dioxygenase activity	Interproscan
GO:0051747	Molecular Function	cytosine C-5 DNA demethylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-