Gene detail

Detailed information of Clavulariidae_g10521 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g10521	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	ctg000221	370348	372528	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Clavulariidae_g10521

ATGAGGTAAGATAGAAAAAGTATCCATAAATATCTAGCTTAAATGTTATCCATCCAAACAAGTACACCCTATATTTTGATAAATAATGTACTTGTCTTTCATTATATGAAAATAAATCCGCACAAACGCTTTTAAATTCAGAAAATTTTTTAATTCAAAAACCGTTGCTCAGGGTTAAATGCGTTATGTGCTCTTTTCTTGTAGTAAAGTAAATCGAGAAGGTTTGACCGAATGCCTGCGTGCTGTTCTTCAGCAATCAAAAGACAAGAAGCGTAATTTTCTTGAAACAGTGGAACTACAAGTCAGTTTGAAAAACTATGACCCGCAAAAAGACAAGCGTTTCTCAGGCACAGTAAAGTGAGTATTTTTTACTCTTTTAACAACATAATGTATGGGGTTTAGGGCTTTAGGCCTGTTGAAATAGCTTATATTAGGAAAGGAACAAGTTTGTATAAAATCTGTAGCTACAATTAACCTTAGATGATCATGATCTGGGTCACTGGGTGAACCCTGCCTCTGAAATATGCAACACCCCCCTGTCTTGATATCACACTTGTTGTTCAGTGGTAAAAaataccaaataagcttgattAGCGATGCACAGTCCAATTATAAACCTTGTATGCCAATTAATTTTTAACTATTCATAGATTGAAACATATTCCGCGGCCAAAAATGAAAGTGTGCATTCTTGGCGATGCATCGCATTGTGACGAGGCCAAGGCAAACGATCTGCCGTATATGGACGCTGAATCGTTGAAGAAACTGAATAAGAATAAAAAGTTGGTCAAGAAACTCGGTTAGTAATAGAACGATTCTTTGCCTTGCTAGTAGCTTGGTcataaaaatatgtattttaaagCTCAATTCATTCGTATTTTAGCAAAGAAGTATGACGCATTCTTGGCCTCAGACAGTTTGATTAAGCAGATCCCACGTTTGTTGGGACCTGGTCTGAACAAAGCTGGCAAATTCCCGACCATGATCACACACAGCGAGAATATGGTCCAGAAAGTACAGGACGTCAAGGCCACGATCAAATTTCAAATGAAGAAGGTGGGTCAATTTACCAGAATCTTGGGCACAGCACTCTAAGAAAGATTCATTATTTCAGTCTTTTTGGGTCAATTGTATTTTCCATAATTAGCTGAATGTAAATACAGTTGGACCTCCCCTTACAAACACTTCTCTAGAGTGCTGATAAGGCCCTTGTAACTGGTAGACCAAAAACTTTCAACCATTCACACATTTTAATGAAAATGGTTGAATATTGGTCGGACCTGTACCCAGGGTCTTAAAACAAATGGGAAGCCAATGTTATATTTGGCGAAATATAGAACAGTACAGGTAATTCTAATTGTGCAGGTATATTATTTGTCAAGCAGGGTTCAAATTAGCAGGTCGTAATTTGCGAGCAGATCTTCGCCACCTGCAAATGGAAAGTTTCATTTTTGTCTAATGAAGGAAATAGCAGAAATCCCTTCGATATCTTAACTAAATTTGCAACGAAACAGCtaccattttgtttttgcaaGCAGTGTTTCATTTTTCCAAATCAAAAtttcctttgtattttcaaaAAATTCCTTTAAATTTCCATAAAAGAAATTTGCGACTCGATATCTGTCGAACTTGCATCTAATAACCTTAGGGCAAGCATTGTAGTGTACcctactggggccggttgtacgaaggccatttagcttaaacggtggataagccaaaattaaaaaacactttcacacatttggtgaatgaccgaacttaaatcttatgcccttaatatatAGTtccaaatataattgttctattcaagttgaaatattttagcttggttgttcgatgaatgtatagacttgatctatattttcgagttatccaccgtttaagctaaacgggcttcgtacaaccggcccctgtactttgtctaatgtcagataattttacttgttCAGAAGAGAGTGTCGGGCATTGAATAGATTTAACTTTATTCATTCCGTCTTTTTCTAGGTGCTGTGTCTTGCAGTAGCTATAGGTCATGTTGAAATGTCAGAGGATGAGTTGTATAACAACACTCTCCTCGCCGTCAACTTTCTTGTGTCACTGCTTAAGAAAAACTGGCAAAATGTTCGTGCTTTGTACGTTAAGAGCACCATGGGACCTTCTCAACGATTGTTCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00687	Ribosomal_L1	Ribosomal protein L1p/L10e family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002143	Family	Large ribosomal subunit protein uL1	Interproscan
IPR016095	Homologous_superfamily	Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain	Interproscan
IPR023673	Conserved_site	Large ribosomal subunit protein uL1, conserved site	Interproscan
IPR023674	Homologous_superfamily	Ribosomal protein uL1-like	Interproscan
IPR028364	Family	Ribosomal protein uL1/ribosomal biogenesis protein	Interproscan
IPR050257	Family	Eukaryotic ribosomal RNA-processing and assembly protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000470	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015934	Cellular Component	large ribosomal subunit	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-