Gene detail

Detailed information of Clavulariidae_g10087 in Trachythela sp. YZ-2020 Gene info

Gene ID	Annotation	Contig	Start	End	Strand
Clavulariidae_g10087	DNA HELICASE RECQ FAMILY MEMBER	ctg000203	7266798	7272192	+

Gene Structure

More details in Jbrowse Sequence

CDS

Clavulariidae_g10087

atgtcgggcgataatagttcaacttttgactttgacaaagaaaataatggcgaaaaaagtaaacagaggttcgtcttaaagtcggataaacaagttgacgagttggtggatagcgtacaagcagaaagcacaaagcataaaacagtatacgctgttgttgacAACAAAGACCCCAGCCTAGCCAGTGCTCAATACGAAGAATTTCAAATTGCAATCATCACTGATGAGATGGAAAAGAAGAGCATGGCAATTGCATCACATTCTCGCAGAGAGGCAGCAAAATTATATGGGCTATTTCTTTTGCACTGTGGCTTGCTGAGACCCCTTGGAGGTACACCATGCTGTGTCCAAGTTGAAAGATCGGGGGATACACAAGATGGTCCAGGCCAATGCTTTAAATTATGGAATGCAGGTGGCAAAATTTATACAGAATGTTTTGTCCCACCCAAAAGGTTGATGTTACCACGAAGACAGCAAACTCAAAGCACTTGCCACGTCAGCCCTGAGTTTCGTCCAACTATTTCTTCAGGAAGTCAATCTCCATTGGAAATACTTCAAACAGTATTTGGACATAAAGAGTTTAAGCCAGGTCAGCAAGAAGCAATTTATGCTATTCTATCCGGTCAGGATAGTATTGTGCTTATACCAACTGCTGGTGGTAAAACGGTTGTTTATGCCCTGCCATGCATAATGACAGCTGGACTTGCTATAGTAGTGTCACCACTCATAATGTTAATGGATGATCAAGTAGCAAGGCTGCGAAGATATGGCATTAATACATGCTATTTTAACACAGCCCTATCTGAAAATGAACGTAGAAACATTCTGCACAATTTAATGCAAGATGATTGCGAGTACCAATTTGTATTTGCCAGCCCAGAAGCGGTTGTGACAAAACAGGTCCAACACTGCTTACAACATCTCAATAAGAGACAAAAACTGAGCTTTTTTGTTGTCGATGAAGCTCACTGTATTGATACATGGGGAAGGGAATTCAGACCAGCTTATCAGCAGTTAggtattttaaaaacattcaaTGTTCCAGTTGCTGCTGTAACTGGGACAGCTACAAATCAAACAGTGGATGTGATTAAGAACACACTTCAGATGACCAACCCATGCATTATTAAAATGCCTTGCAGAAGAGATAATCTTGAATATTCAGTTGTTGCAAAGAAAGACAATAGAGCCAAGCAACAAGTATCTTCTTTGATTGCAATGGATCATCCAGAGAGCTGTGGTATTGTGTACTGTGCCACTCAAGCTGACACAGTTGAAATGGCCTTTGTTTTAAAAGAGCAGGGGATCACAGCAACATATTACCATGCTGGGTTGGAAAGTGGAGAGCGTGCACAAAACGCCTCACTTTGGCTGGATGGCAAAGTGAATGTAATGTGTTGCACAAATGCATTTGGAATGGGCATAGATAAACAGGAATACGACCGAAGTTTCCACCTTCGTAACATCTCAAGAATGGAAACAGAACAAGCAAAAGATGTAAAACTTTTGCTTTTGAATGCAATCACTCGTTTTTGCATGGAACATTCTATTTGTCGACAACAAGGTGTGGAATGGGATGAACAAGGTGTTGGGGTGACATGTGATTTATGCAATGTATGCCAGAAGGAGGAAGTCCAAGATCAAGTAAGCGACCACACACAAGAGGCTAAAGACATTTTGGAATGTCTGACTAGCATGAATGTCATGCAGGACAAAGTTAAAATCAGTGAGCTTGTAATGACTTACATGGGCTCGAAAGCGAAAGAAATCATAAGTAAGAACTTCCACATGGTTGCACAGTATGATAAGGGGAAAACACACTTTAAAAACAGTTCAATCGCCACTCAGTTTGTACAATATTTGATCTTTGAAGGACTTCTTAAAGAGAACCTACGCAAAATTGCGGACAAAGTTTCTTTGACATATTTCACACATGGCAATGTTGCAAACTTAATAAGTAATGCATGCAAGGTATTCTTCTGTACTAATTTGAAGTAG

Transcript

Clavulariidae_g10087

atgtcgggcgataatagttcaacttttgactttgacaaagaaaataatggcgaaaaaagtaaacagaggttcgtcttaaagtcggataaacaagttgacgagttggtggatagcgtacaagcagaaagcacaaagcataaaacagtatacgctgttgttgacgttttttgggagaattgcaatgtacatcaaatatattaataaacctttttttatatttctgtgtggttattttataaaacaaataccgcattgatttccgtgcatgattctctgtttcttacacttgggatgttgctcgactttcgtaaagctaaaaaaaactcgcctatcggctcgttttttttacgcttttcgaaagtctcgcaacaacccgcgtgtaagaaacagagaatcatgcacggaaatcaatacggtattcctttaataGCATATTGTCGACATCAAATAGACCGGTTCAAGAGGCGAAAGAACAAAACAAGATATCGTGTGCCGAGTGCTATAAAAGCAATGCCGTTATAAAGTTTTTTTCGAAGGGAGTGGGACTGTTGCATCACTTCAAAATAAAGCATCGCAATGTGGTGTTTAATGAGAAAATCACGAAGGAAAATCTTCATGGCCAGGAGACGTATAGAATTTTAACACAACTTTCCGAAGCACGCCTTCAAATGGTAAGAGTATTTTTATCAGGATATTATCCgagtttatataaaataaaaatatctgtaAATTATTTAGTCAGAtgatagacggattttcatatttattactaggggggtgccagaaattttaggggggtGAGCTGGCAAGGCatcaccaaacgttgtgctgcagggctcagcccCAAGTGAGGTCCAAGGGTGGGAGGCTAGAAAGAAAAGCACCCCCGGAAAAGGGTGGGAAAGGTTTCTAGAGTGCATCAGAAGTCATTCAAAGCAAAAAACTAAGGTATATGAAGTTGTTAAGTCAATGAATTTGGTAGGTCCTTTGAGAGAGGTAAGTAACACTGTAACCCCACACATGGTTCTATAGGGTTGCATGTTGGACTATTTATTATGGCGTTTTTTAGAGGGGTGAACATTTTGTTTGGGGGAGGAAATCCATCTGAGTCAGATTCATTGGTCAAATTGAGAATTCCTGAAATCCCATGACATGGTGTAAATATAAAGCTGTAATGCTGCTATTAAATAAATCAAGGAAAGAGCctttaatatatccatatttaaGGACTGATATTGTTGCTTCATGGTGGTGAACAACTTTCTTTATATGACTTAATATATAGAACAAAGACCCCAGCCTAGCCAGTGCTCAATACGAAGAATTTCAAATTGCAATCATCACTGATGAGATGGAAAAGAAGAGCATGGCAATTGCATCACATTCTCGCAGAGAGGCAGCAAAATTATATGGGCTATTTCTTTTGCACTGTGGCTTGCTGAGACCCCTTGGAGGTACACCATGCTGTGTCCAAGTTGAAAGATCGGGGGATACACAAGATGGTCCAGGCCAATGCTTTAAATTATGGAATGCAGGTGGCAAAATTTATACAGAATGTTTTGTCCCACCCAAAAGGGTAAGTATGGTTTTGTACTGCTCTACACTGTATACTAGAATActatggatatatatatatatatccatttcggcaccaaaatctaagtacaccatttcacgtgcacttcctctcatctcatctactgtatttcatgcagtaaatgtgggatgctctatattggtgaaactggtagatatttaaggacaaggtttggtgagcatcgtcatGCTGTcataaacaatgatgctaaacaacctgttgccagacatttcaacactggcaatcacagtgtttcagatatgaaaattcgagctctgtgtcccatttctgtttagcaatgatagccgcaaaagccaagaaatgtgtctcatttcccaacttggcaccattcatcctctcggcattaatgagcacctctcttacatttaactcctatctgtttatgcctgccatcagcagatactctacatctcaccttatctaatattccGTTCCTTGtcttctgtctttcttgctttgttatctttgctcgctgctacttatatgctaatatattttgtgatgtgatttccatattttgtttatagtttgttttgattaaatccatctgattggtttattttttatcacgtgatcgcttttgtattcactataaaagcacatgttttcccccgacccattctactaacttccagcaTCTCGACACATctaagttctcattgtatttttcaggtagttttacaccacagtcaaccgccatatatatatatcacgcatgtctggatgcgcatgtgtctgagtattgtacctgacatgcgcttggtgagggcaagagtatggtgtataaatacgaagtcactcgcatctagactgcgttacaagctgcactgacgagctgttgaacggcgaaacatgcatgtctgcagatttgactatatatatatatatatatatattgatatttttgtaagtgtttgtttcactttactaggatctatagaaaagcccccacgcaataatcctttggttaggtggaatgaggacgatctaatggaatgaataccgttttcccctagtattttgtagtagactaaaagagtgcactaaccgaagtgtgctaatatagtatggtatttagtgtttgtttcacataacatacgtacctcaaataacatggatataatttccttccctctcagctatcttaaatgaataagactccagcccttgggacactggatggcggcttaaaaggaggaaggaatatttgatgacatttatttatctacatgagtttgaatatgataacatttttactcAAACATCATTGTTCAAAATGTTCTAGAACAATTTACCCACGCAAGATGTAATTTGAGATATGACCTGCTCAATTTTTACAGGATTTATTCATGGCGTCTACAAAGAGTGCACTAGCCGAAGCGTgctttatatattgatatttttgtaagtgtttgtttcactttactaggatctatagaaaagcccccacgcaataatcctttggttaggtggaatgaggacgatctaatggaatgaataccgttttcccctagtattttgttatttgaggtacgtatgttatgtgaaacaaacactaaataccatactatatatatatatatatattttcgcttacctcaaaacttgtctgcaacaggctgtttaaTCTGTAAAAGAATTCTTTTTAATCTGTAAAAgaattcttttacagatgaaacagcctgttgcagacaagttttgaggtaagcgaaaatctataatttgctctaactatatgttgtcgagcactctttgcgtttcgtagacctaaacctacacgtatatatatatatatatatattataatggaTAAATATtgattaactcattagctggaaATGTACCTGGATGCACCTACtctagtattttactctgcctaacgccagatgattttactcgttagttgaagtactgccagttaataggttaaACAAGCAGCAATGATATCTGCAGCAAGAAAAAATTGCTCTGGACTATACATTGCTAGCGAAGGGGATATAAACTCTACACTTATTTTTACCTTCATTTTATGTTTTATAGAATGCTAATAATTAGTATTTATTTTTGTTGAAAACTATTTAGTTACcaattacaaaatgttttaaatttctaaTTACAGTTGATGTTACCACGAAGACAGCAAACTCAAAGCACTTGCCACGTCAGCCCTGAGTTTCGTCCAACTATTTCTTCAGGAAGTCAATCTCCATTGGAAATACTTCAAACAGTATTTGGACATAAAGAGTTTAAGCCAGGTCAGCAAGAAGCAATTTATGCTATTCTATCCGGTCAGGATAGTATTGTGCTTATACCAACTGCTGGTGGTAAAACGGTTGTTTATGCCCTGCCATGCATAATGACAGCTGGACTTGCTATAGTAGTGTCACCACTCATAATGTTAATGGATGATCAAGTAGCAAGGCTGCGAAGATATGGCATTAATACATGCTATTTTAACACAGCCCTATCTGAAAATGAACGTAGAAACATTCTGCACAATTTAATGCAAGATGATTGCGAGTACCAATTTGTATTTGCCAGCCCAGAAGCGGTTGTGACAAAACAGGTCCAACACTGCTTACAACATCTCAATAAGAGACAAAAACTGAGCTTTTTTGTTGTCGATGAAGCTCACTGTATTGATACATGGGGAAGGGAATTCAGACCAGCTTATCAGCAGTTAggtattttaaaaacattcaaTGTTCCAGTTGCTGCTGTAACTGGGACAGCTACAAATCAAACAGTGGATGTGATTAAGAACACACTTCAGATGACCAACCCATGCATTATTAAAATGCCTTGCAGAAGAGATAATCTTGAATATTCAGTTGTTGCAAAGAAAGACAATAGAGCCAAGCAACAAGTATCTTCTTTGATTGCAATGGATCATCCAGAGAGCTGTGGTATTGTGTACTGTGCCACTCAAGCTGACACAGTTGAAATGGCCTTTGTTTTAAAAGAGCAGGGGATCACAGCAACATATTACCATGCTGGGTTGGAAAGTGGAGAGCGTGCACAAAACGCCTCACTTTGGCTGGATGGCAAAGTGAATGTAATGTGTTGCACAAATGCATTTGGAATGGGCATAGATAAACAGGAATACGGTTTGTGATTCACCTCACATTTCCATCATCGCTTGAAGATTATGTTCAAGAGTCTGGGAGAGGAGGGCGTGATGGAGATAAATGTAGCTGTATTCTTCTTTTTCGGTTTGGAGACCGAAGTTTCCACCTTCGTAACATCTCAAGAATGGAAACAGAACAAGCAAAAGATGTAAAACTTTTGCTTTTGAATGCAATCACTCGTTTTTGCATGGAACATTCTATTTGTCGACAACAAGGTGTGGAATGGGATGAACAAGGTGTTGGGGTGACATGTGATTTATGCAATGTATGCCAGAAGGAGGAAGTCCAAGATCAAGTAAGCGACCACACACAAGAGGCTAAAGACATTTTGGAATGTCTGACTAGCATGAATGTCATGCAGGACAAAGTTAAAATCAGTGAGCTTGTAATGACTTACATGGGCTCGAAAGCGAAAGAAATCATAAGTAAGAACTTCCACATGGTTGCACAGTATGATAAGGGGAAAACACACTTTAAAAACAGTTCAATCGCCACTCAGTTTGTACAATATTTGATCTTTGAAGGACTTCTTAAAGAGAACCTACGCAAAATTGCGGACAAAGTTTCTTTGACATATTTCACACATGGCAATGTTGCAAACTTAATAAGTAATGCATGCAAGGTATTCTTCTGTACTAATTTGAAGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF09382	RQC	RQC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR004589	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR018982	Domain	RQC domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-