Gene detail

Detailed information of Chiridota_g944 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g944	DNA2/NAM7 HELICASE FAMILY	chr_1	57953270	58014598	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g944

ATGCATGCAACTCACAGTAATTATGGTGCTACATATAACATTACCATGGATACCCAGAAGAGAGGAGGAAGAAGAGCAAAGAGGGAGAAATCTGAGGTTCAGCAGCTTGGCCACACATTCTTTACCTTTGTCAGTGGCTTAAAAGGGGGGCCGTATACAGATAAAGAGGACCTCCGGGATATCTTTAAAAAAGGATTCAGGGAATCCCTCAGGCTTACTGGCACATCTGCAGGATACTGCTTCGCTACAATGATGTATGATTTAAGAGAGATGAACTTCATCTCTTACCGAGGCGGAAAAGTTATTGTTCATAAGAGTGCGGGTCTGCCCATCCTAGACCAGTATTATACCGGGAGGAATAATGATAAGGGGACCAAAAAGAAAGCCGAGACTACTTCATCAGACAAGCCAAGCGCATATCCTGCTTTTTGTGAGCTATGTAGTATATGGATTAGCTCTGAAACATCTCACCAACAGCATCTGCAAGGTGCAAAGCATAGATATCAGCTGAAGATGCAAGTGGTAAAAGTTAATCAAAAAGAATTGAGCAAACACAAATATGGAGTTCAGATCCATGTCGATGGACGAGAAATGCCAGATGGGAAGATGAAGGTCAATGGTCAAGTGGGAGAGCAAAGTGAAGTGGACCTAATGATATATGCAGCGAACAACAAAGTTCGCTTGATGGCCGGTGTAGTTCTGACCAGTGATATGTCTGTTGGAATGATCGATGACTTTAATATTTCAAAAGGAAAGCAAAGAATTGATTTGGAAATAGGCGCTTGTTATCAAGTGAAACTGACTTGCACCCCAACTACCATAGGAAACATCAGTGCCCCAGTAGCTTTCTCCTTCAAATGTCTGCAAACAAAAAAGATTTTCCATATTTTTAGGTATATCCTATTTTCAACCAAAACTGAAGACCCTGATATTGAAGATCTGTTACCAAAGGTACCTTATACAGGTCCAACCAGAGTGTCTCTTAAACCATGGCCAGGAAACCTTGTTCAAGGGGAGCCTTTACCTGAGTCTGCTACTCAAAAAGGTAAGAAATATCTCAGTATGCAGCAAATGAAGAATTACAAAATTCCTGAGAAGCTGAGAAGATCCCTCAACTTCAAGCCAGAGCTGGAAAATATGAAGGAAGAGCTAATATGTGAACTCACCGAAGCCAGCTACAAAGTGAAGTTTGACAAACTGCTCTTTATTGAAGAATGTCAGATGGATGTTGATATTCGACGCTACGACATGAAAGATCAAACATTTGCAAACGACTCAAATAAGAAATTCCTTCGTCTCAAGGTGCCTGGATTGGCTGAAAAACGACCGTCTGTTCTTAAAGGAGATGTTGTCAATGCCCGCATTGTTGGATCCAATGATGACAAAGTCTACCAGGGGGTTGTGCACAGAGTTGAAGATGTCCAGCTGGTCTTGGGTTTTAGCAAAAAATTGTTAGATAAGTACGTACCTGGTATGAAGTTTGACATCCAATTCACGATTAGTCGCTTCCCGTTAAAATTGCAACACCATGCTTTGGAGTACATTTCTTTGAGTGATCTCCACCCTGTGATTATCCCAAATGAAGACACGATATGTACATCACAGTACGAAGGTCCACAGCTTCTTGAATTCAGCCAATTCAAGAAAGATTTGTTTGATCTCAAACTCAAAGAAAACGACGAACAATCACAAGCTGTCTTTCATATTTTGAAAGGGTCGTCTCAACCTGCCCCTTATCTTGTGTTTGGTCCACCGGGGACTGGCAAAACTGTCACAGTAGTGGAAGCTATCAAACAGGTTTACAGCAAGATCAAAGATAGTCGTATTCTTGCCTGTGCACCATCTAATAGTGCAGCTGACCTCATCACAAAGCGCCTTCTTATTGGTAAGAATGGAACTCCTGTGGCGAAGACTACACTTCTTCAGATGTGTGCGAAAAGTCGTTCGTGGAACGGTATTGACCCTGAGTTAATACAAGGGAAATGTGGTGAATGTTTTAACTATGATGACGATAAGGAAGTTTTTTACCCACCAAAGGAGAAAATTATGGAGAAGAGAATCATTGTGACTACTCTTGTATCAGCAGGAAGATTAGTACTGGGCAGTATTCCCAAGGGACATTTCACACACATATTCATTGATGAGGCGGGCCATGCAGTGGAACCAGAGGCCATTATACCCATCTCCACCCTCTTGGACCCTAAAGGTGCCAATGGGGGACAACTTGTCCTTGCTGGTGATCCCCAGCAGCTTGGACCAGTGTTGAGGTCTCCAGTAGCTAAAGAATGTGGTCTGCAACTATCACTTCTTGAGAGACTCATGAAGAAAAGTGGACCTTACCAAAGAAAAACAAATTCACCCACACCATACAATAACAAGATATTGACGAAACTGGTGAAGAATTACCGGTCTCACCCAGCCATTTTGGAACTACCCAATCAAATGTTTTATGACAAAGAACTGGAAGTATGTGCAGATGAATTGATGAGAAATTGTCTGTGTGGGTTTGAAGAGCTGCCAAAGAAGGATTTCCCCATCATCTTTCATGGCGTAGATGGCACAGATCGCAGGGAAGGCAATTCACCTTCCTTCTTTAATGTGGAAGAGGTGGATTGTGTTCACAGGTATGTGCAGGCTATCCTTCAGAAGAAAGGTGGGAAGAAGATCCTGAACAGTGACATTGGCATCATCTCTCCATACAGGAGGCAGGTTCAAAAGATCCAAGAAATTCTGAGGAAAAAGAAGATCAAAGACATCAAGGTCGGCTCAGTGGAAGAATTCCAGGGTGCAGAGCGTTTGATCATCATCATATCCACCGTAAGAAGCACCAAAGAGGAATATATCAAAATGGACGCAGACTTCAAGCTTGGCTTTCTGAAAAACCCCAAGCGTTTCAATGTGGCCATTACCCGTGCCAAAGCTCTTCTCATTTGTGTCGGCAATCCGTATTCTCTTTGTAAAGATGAGCACTGGAACAAGTTTTTGAACTATGTCAGAGATAACGGTGGATACAAAGGCTGCAATTACACACCTGACGACAGTGACATGGAGGAGGTTTTAAAGAAGTTTGAGACTCTGGGTTTAGAGGAATCAGAAATGAGTGacctcaagtacacagtggttggtgtttcccacgctaccccggcgctagtaaagtcattacgttggatgcgttttctcgggtttctagagtttttcagatag

Transcript

Chiridota_g944

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF13086	AAA_11	AAA domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan
PF21633	MOV-10_Ig-like	Helicase MOV-10, Ig-like domain	Domain	Interproscan
PF21634	MOV-10_beta-barrel	Helicase MOV-10, beta-barrel domain	Domain	Interproscan
PF21635	Mov-10_helical	Helicase MOV-10, helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR026122	Domain	Helicase MOV-10/SDE3, DEXXQ/H-box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR045055	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR049077	Domain	Helicase MOV-10, Ig-like domain	Interproscan
IPR049079	Domain	Helicase MOV-10, helical domain	Interproscan
IPR049080	Domain	Helicase MOV-10-like, beta-barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0032574	Molecular Function	5'-3' RNA helicase activity	Interproscan
GO:0035194	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-