Gene detail

Detailed information of Chiridota_g887 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g887	POLY A POLYMERASE CID PAP -RELATED	chr_1	55129935	55144876	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g887

atggagacaatggtcagagaggacAGTGAACAATGTGTTAAGGATCATGTCCAAGGAAGGAAACACCAAAGAATTATCAGCCTCAAGAGTACCAGGGAAGAACAAGCTGAGAAGAGCGTGTTTGTGGGTGGGTTGTGCAGACTTGTCTCAGAACTTGAACTTACTGACTTCTTCTCAGAGTTTGGTCCAATCTCTCAAGTGATCATAGACAAAGAAAAATCGAAATATGCCATTGTTGAGTTCACATCTCCAGAGGCAGCTACTAAAGCTGTGGAAAGTGAAAAGCAAACGATGAATGGCAGGAAAATTCTTGTGAGACCAAAAGAGAACAAGCCGTTTATGCCACGCAGGAGAGGAAACAAGAGAGGGGGTAACGTTGTTCTCAGCTCAGATGAGGTGGCGATGTTTAACAACCTGGCTGAGCTAAAAGATCATATCTCTCAAATAAACGCACTGGTAACAGCTACATCATTATCATATGAAAGTGTGAAGCTCCGTTACCTCATCTGTGGTCTGCTAAAGGAGGTCTTCTGTGAATTTTCTTCGCATTGCCATGTTTATCCCTACGGGTCATCAGTCAATGGGTTTGGAAGAGAAGGATGTGACCTGGATATTCATCTAAGTCTGTCTCATGCCGGAGAGGGATTTTCATACAAATTTGCCAAATTtgaagatgatgatgatgatgaagaagaagttgctgatCAGAGCTATACACCAGCCATCACAGAAACAGATGATGTAACAACAGATCTTGATTTTAATAGCGCAGGGGATGAGGAGGTTCTACAGTTTGTCTGTCAGGTTCTTCGTAAATGTGTCCCGAGCTGTCAGAACGTCAGAGTCATTCCATCGGCGAGGAAGCCTCTTGTTAAGTTTATTCACAAGGAGTCGAGCTTGCATTGTGATGTTGTGTTGAACAACAGATTGTCCCTTAGAAATACAGAACTTCTTCAACTCTACACCCAGCTGTGTTCTAATGTCCGACCTTTGATCTTTAACATCAGACAATGGGCAAAGTGTCGTCAACTAGCTGGCAATGTTGGTGCTGGACCACGCCTCACAAATTACGCACTCACATGGCTCGTCATATTCTTTTTACAAAAGAAAGGAGTAGTTCCCTCTGTGGAAACTTTAAGAAGATGCGACGATTCGGGCACAACCGTCACTATCGATAAATGGAACTGCAGTTTTCAGTCAGATGTGGAAAAAATCCCCAAAGCTGCGACAGAGACCTCTGCAGtaatgatggcaatgctttacagtaacttcaacattctggagagctttgaagacggtgacggctggttggagaacagcgaggactgggacttcaacgaaaagccacctttcaaagtaaaagtggacaatacttttgaagaggcagaggaggaagaggaccagggcgtgaccaatggcgagtgggccagagtgttattaacacttgacgaggactggctgattgccaacgagtggccAGATACATACTTaccttacctagctgcttcgtgccaagtggcacataaggcctccacacaatgtttccactcagtcctgcaggctgcagcaatcataatcttgttccacgttttccatcctgccttaaacaaaaagaaagatcaagcaaagaaaaaagaaaTGCACCTTTGGGTGGAGAAATGGTACAGCGGTAccggcagagaaattagaaaagcaaaggaaaagatggaggtggacgaggttgtagaaacagggtgcagcgttgcgacccaaacacaagaaccaatgaatattcctttaaAGGAAGTTGTTGTTCTTTACCAATTACATCATAAACAAGCATTACATATTGGCCTGTATCGACCCaatgttcagcggtcagctgcccgaatcatgaaacgtcaaaaagtttacccaatatcatctgaactggtcaacctccactggttccctgttaaacatcgcattgattttaaagtcctcattatgatcttcaatgctctccacaacctcgctcccacctacttctcagatttacttacaatccgacagagtcccacacacctcagatcctcaacatcttctactttacttcatgtcctcaaaactcatcatgttatatttgcagacagatctttttcttgcaatggcccaaaactttttggaataaactaccatcctttatcaagaatgctacatctatcaccttttttagaaaagacctaccttttcaaacaagcttaccagagatga

Transcript

Chiridota_g887

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12271	POLY A POLYMERASE CID PAP -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0031123	Biological Process	RNA 3'-end processing	Interproscan
GO:1990817	Molecular Function	poly(A) RNA polymerase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-