Gene detail

Detailed information of Chiridota_g5947 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g5947	DELTEX-RELATED	chr_3	48632244	48690366	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g5947

atgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgctatgtcccccatgtgcacaattgcgatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtaccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtaccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtaccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccacatgtgcacaattgcgatgtaccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaattgcgatgtcccccatgtgcacaatttcgatgtcccccatgtgcacaattgcacatggggggcGAAATTCAAGGCCAATACGAAGAAGAACAGTTGGACCTAGCTCCCCAGCCAGCAAAGGGGTTGAATGGCAATGGCAGGAAGATAATGGCTGGAGCCAGTATGACCTGGATGCAAGTCAATTCATTGAAGAGGCCTACACTGCCAAGAAACCAAACATAGACTTGTCCAAAACCAAATGTCACCTTCCTTACATCATTGATTTTACAAACATGATTCAAATTAAAAACTATACTGGGTTTCAGAGGACCATTCGTAGAGTCAATCTAACTCAGCTCTATCCTAAAGTATCAAGCGCTGGTTCGTGTATATGTTTCCAGAGTTCTGACCCAGCTCTGCTTGAAAGTGTTCCCCCTGTAAGCAAAAAGGACTCACAAGAAGAGATGGAAGTTCAAACCTCAAATGAGGATCCAGCACTAAGAACTTCACGCGATTCTTTACCAAACACTGAACTGAAGTCCGATTCCAATACAAATATATCCACATGTAGCTTGCCAGATGCGGTAGAAAGTTCAAATTTGAGTGGAAGGACAACGCGGAGTGGACGAAAGGGGTCTGGTAAAAGACCAGCTGCAAGAAAGGCTGTGGCGTCCAAGGGGGAGAAGAGGGCAACAGTTGCCTGGTCCAGTCCAGGAGGTGATCCCATCGGTTCGTCTTCTAGTACAGATAATACCAAAGATGAATTATCCAGAACTGTCAGCGTTCCTACCAATCTGTCCCTTCATGGACCGCCTTCTACCAGCAGCCAGGGTGCAGCAGCGATTCCATCCTCAAAGCTATCACACAGTGCAACAACATCTCAACTGTCCAATCGAAAAAGCCCTAAGGTCAAGATGACCAGATCCCAGTCCACACCATGCAGTATCACAGCTAATGCTGCTTTTAGAGCAGGCCCACACTTAAGCCCTGTCATGACTGCCATGACGAGCCTATTGATTTCTACAGCCATCCCTGTCACACTTACTCCCACAGTCATTTCCATCGCCCCGCCATTTGCAGGTGGCATTCGACCAGTAGAAGGTGTGGAGAAGCCAAGCAAGAGGCGAATGAAGATGGCACCAGTGCCAGAATCACCCTCAGAGGTAATTGAGAAGTATGTAACCATCTTGCCTGAACCCCCAGATGAGGATTGTCCAATATGTTTTGAGAAGCTTTCCGTGGCCTCTCACTACCATGAGGATGAGGCGGACGGTGCGGAGAAGGAGGGTGAGGAGGACAAGGTCATGAGACTGCATCAGTGCGGGCACTGCTTCCATAAAAGCTGTCTTAATGCCATGTATTCAAGTGGTCCCAAGGATGGTAGTTTACAATGTCCAAGCTGCAAAACCATCTATGGCGTGAAGTTTGGAAACCAACCCGCGGGTAGCATGGATTACCATGTTATACCATTGCCTCTACCTGGATACCAAAGCAGTCAAACCATTAGAATCATCTACCACATTCCACCTGGTATTCAGGGCCCAGAGCATCCACATCCAGGAGAGCGTTACTCAGCAAGGGGATTCCCCAGACACTGTTACTTGCCAGATACAGAACTTGGAAGAAAGATTTTAAGACTTCTAATTGTGGCGTGGGACAGACGTCTTATATTCACCGTCGGAACGTCGGCCACCACTGGTGAAAACAACACGGTCATCTGGAATGAAATTCATCACAAGACAGAGATAGGATCCAATCGAACTGGTCATGGGTACCCCGATCCTCGCTACTTTGATAACGTGCTTGCAGAACTTCATGCGCATGGTGTAACAGATGAAGAAGGCAGGGAGCTACAACAAGTCAGTCCAGGGTCTAGTTGA

Transcript

Chiridota_g5947

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02825	WWE	WWE domain	Family	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF18102	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR004170	Domain	WWE domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018123	Domain	WWE domain, subgroup	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR037197	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR039396	Domain	Deltex, C-terminal	Interproscan
IPR039398	Family	Deltex family	Interproscan
IPR039399	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622	DELTEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-